BtaEX0041216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53711815-53755840:+
Coord C1 exon
chr10:53711815-53712667
Coord A exon
chr10:53739709-53739855
Coord C2 exon
chr10:53755723-53755840
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTTTGAAAATTAGATA
3' ss Score
5.32
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
CTTTTTAATGGCGCCTCTCTTCTTAGACCTTCTTACTTTCCAAGCTTACGGAAAACTAGCTGTTACACACAGGGAGGTCCTGGAACTCGCTTTTCCACGTCTTCAGATTCGATGCGGCCCCGGTTTCGGGATTGCTGGCCAGGGAGTAGGTGGCACCCACGACCGCTCCGACCCCGACCCAGTCCCTGGCAATCGGCGGCGGCTCGCTCGTGGAGAGCCACCGGATCCTTCGAGGGCTCGCGACGCGGTGCACATGCCCGCGCCCGCCTCCCGCGTCGGCGAGAAGAAAGGGAGTCCGGACGCGCAGAGGCTGACCCGGAGCCTACCCATGAGGCAGCGCGCTGGCTCCACGAGAGCCCCCCCTGCCCACGGCTCGGCCGCCTGCTCCGCAATGGGAGCCGCCGCCGTCGCTGCCGTGTAGTTTTTCGTGCTCCTCCTTTTCCTCCTCCTCTTTCTCCTCCTCCTCAGGGCCCCAGTCAGGCCGATCCGCTCCGCTCACG
Seq A exon
ATAATTCAAAAATGGCAGAGCTCTTTATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGAAGAAAGTAAAAGAGGTTGATGATGATGATGATGATGAACCGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCAATTTCAA
Seq C2 exon
GGTTATGTAACGAACTCATCACGAGTTGTTTCTAATAATTCTTCAGAGTTACTGTTTGACTTGACCCAAGATTCAGGATTACCACATTACCAAGCAGGACCAGCACTTTCTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486_MULTIEX1-4/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.350
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138361=DUF4195=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGAAAGGGAGTCCGGA
R:
TCGTGATGAGTTCGTTACATAACC
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development