RnoEX6036454 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78872573-78879014:+
Coord C1 exon
chr8:78872573-78872634
Coord A exon
chr8:78876353-78876499
Coord C2 exon
chr8:78878949-78879014
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCTTTTAAAAATTAGATA
3' ss Score
4.93
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GTGACAACGTATAGAAAGTCAGATCTACAACTTGATGGGTGACAGTTCCTTTCAACCAAAAG
Seq A exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAGGAGGAGCTAGAACCATGGCAGAAGAAAGTGAAAGAAGTTGAAGAGGATGATGATGATGAGCCCATCTTCGTAGCAGAGATAGCAAGTTCAAAACCAGCTATTTCAA
Seq C2 exon
ATATTTTGAACAGAGTTAACCCGAGCTCTCATTCAAGAGGAATAAAGAATGGTATACTTAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631-'3-9,'3-7,6-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=0.540 C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
PF138361=DUF4195=PU(10.0=28.0)
C2:
PF138361=DUF4195=FE(11.8=100)
Main Skipping Isoform:
ENSRNOT00000089335fB16903
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAACGTATAGAAAGTCAGATCT
R:
ACCATTCTTTATTCCTCTTGAATGAG
Band lengths:
115-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]