BtaEX0041238 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016513 | ZNF331
Description
Bos taurus zinc finger protein 331 (ZNF331), mRNA. [Source:RefSeq mRNA;Acc:NM_001103251]
Coordinates
chr18:61021287-61027673:-
Coord C1 exon
chr18:61027589-61027673
Coord A exon
chr18:61023900-61024035
Coord C2 exon
chr18:61021287-61021467
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATGTCCTTCTCCTCCATCAGGGA
3' ss Score
9.21
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATCTGGCATCTCTGGATTTTGTGTCTTCAGTAAGGGCGACCCCAGGAGCACTGATCAGTCCTTGAATTCTAGAACTATGGCCCAC
Seq A exon
GGACGCAAGGGTTTGGTGACCTTCTCGGATGTGGCCATCGACTTCTCTCAGGAGGAGTGGGCATGTCTGGACTCCAGGCAGAGGGACTTGTACTGGGATGTGATGCTGGAGAACTACAGTAACCTGGTCTCACTTG
Seq C2 exon
ATTTGGAATCACCATATGAGACCAAGAGTTTACCTTCACAAAAGAACACTTATGGGATGAATTTTTCCAAACGGACCTCAAATAGAAAAAGTAAATCCCGTGGCCTTGACTGGACATGTGAAGGTGAGCTGGACAGATCACGGGCCCCTCGAGAGAGATTAGCCACTCAAAGGAGGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016513_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=89.1)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCTCTGGATTTTGTGTCT
R:
CTAATCTCTCTCGAGGGGCCC
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development