BtaEX0041305 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr18:47700143-47715568:-
Coord C1 exon
chr18:47715442-47715568
Coord A exon
chr18:47706935-47707019
Coord C2 exon
chr18:47700143-47702849
Length
85 bp
Sequences
Splice sites
3' ss Seq
GACAATTATTTTTTTCTCAGCGC
3' ss Score
6.71
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
AGATCAGTGATGTTCAGGGATGTTGCCATTGACTTCTCTCAGGAAGAGTGGGATTGCCTGGACTCAGCTCAAAGAGATTTGTATAGAGATGTGATGTTGGAGAACTATAGTAACTTAGTGTCACTAG
Seq A exon
CGCTCTGAAGATATTATTCCACTGTCTTCTGGCTTCTGTTGTTGCTCTTGAGAAGTCTGCCATCTGTCTCATTGTTGTTCCTTTT
Seq C2 exon
ACTTGCCCTCAAGGGGGGCAAACAAGCTCTTATCTCCAAAAAAGGACATTTATGAAACAGGATTATCCCAATGGGAAATGAGTGCCAGACTTGAAAACTGTGATCTTGAGAACTCTAGTTCCAGAGATCATTTGGAAGTCAAAGGCACATTGGAAAAGCAACAAGAAAATCAGGCATATTTCAGTCAAGGAATGATCATATATGACAACATGTCTATTTTCAACCAGCATGCTTATTTATCTCAACATCCCAGGTGTCATTCTACTGAGAAACCCTATAAATGTAAGGAATGTGGGAAGGCCTTTAGACGAGCCTCACACCTAACTCAACATCAGAGTATTCATACTGGTGAAAAACCCTATGAATGTAAGCAATGTGGGAAGGCCTTTAGTCGTGATTCACAGCTCAGTCTTCATCAGAGACTTCATACTGGTGAGAAACCCTATGCATGCAAGGAATGTGGGAAGGCCTTTACTCAGAGCTCCCAACTTATTTTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038050_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF097235=Zn-ribbon_8=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Main Inclusion Isoform:
ENSBTAT00000054598fB8007
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTGGGATTGCCTGGACT
R:
TGGCACTCATTTCCCATTGGG
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development