BtaEX0041365 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000001947 | ZNF514

Description

Bos taurus zinc finger protein 514 (ZNF514), mRNA. [Source:RefSeq mRNA;Acc:NM_001110091]

Coordinates

chr11:1935589-1942199:-

Coord C1 exon

chr11:1942111-1942199

Coord A exon

chr11:1939287-1939413

Coord C2 exon

chr11:1935589-1936571

Length

127 bp

Sequences

Splice sites

3' ss Seq

GGTTGTCTTCTGTGTTTCAGGAC

3' ss Score

10.4

5' ss Seq

TGGGTGAGC

5' ss Score

7.23

Exon sequences

Seq C1 exon

TTCTCCCTTCTCAGGACCCTGCTCTTCCTCCAGAGAGAGGCCTAGGAGAAAAGGGAACAGCCAGTTTATTCCTGAAAGCCAGACCTCAG

Seq A exon

GACCTGATGACATTTGAGGATGTGGCTGTGGAATTCACCTGGTGGGAGTGGGGGCAGTTGGACCCTACTCAGAAGGACCTGTACTGGGAGGTGATGCTGGAGAATTTCAAGAACCTGGCCTCCCTGG

Seq C2 exon

ACTGGGAGAGAAGGCCTCAAGCCAAGAAACCTATGCTAAGTCAGGGACTTTCCAAAGAAGAATTATTTCAGAGAGCATCAGTGGAGAAACACATTAGAGATGAATTCAGGTCCTCCAAACTGAAAGCAACCTGTGGTTGGGATGACCAGGTAGAGATATATCCAAAAAAACAGGAGAGACATCTGAAAGAAACGTCACTCACTCAGAAATCTCCTCCCACCCCTAAGAGAGGTCATGAATCGAGTGAATCTGGGACCAGTTCAGGTTTAAGATCAGTCCCTATTAACCAACACCATGTTCCCACAGGAGAAGGATACTATAATTGTGATACAGAATTCAGACAGATTTCAGGGAGAAGTGACTCTCGGAGAACCCAACCAGGGAAGAAATCTTGCAAATGCAATGAATGTGGGAAGTTGTTCCATTTCCAGTCAGAACTTCAGCGCCATCAGAGACGTCACACTGGAGAAAAGCCCTATGAGTGCGGTGAATGTGGAAGA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000001947_MULTIEX1-1/2=C1-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.500 A=0.000 C2=0.282

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=100.0)

C2:

PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF0013017=C1_1=PU(69.6=11.9),PF134651=zf-H2C2_2=PU(53.8=4.3)

Main Inclusion Isoform:

ENSBTAP00000048955