HsaEX6014408 @ hg19
Exon Skipping
Gene
ENSG00000144026 | ZNF514
Description
zinc finger protein 514 [Source:HGNC Symbol;Acc:25894]
Coordinates
chr2:95818419-95823184:-
Coord C1 exon
chr2:95823096-95823184
Coord A exon
chr2:95818878-95819004
Coord C2 exon
chr2:95818419-95818514
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTGTCTTCTGTGTTTCAGGAC
3' ss Score
10.01
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTTCCCCTTCTCAGAATCCTGCTCTTCCTCCAGAGAGATTCCCAGGAGAAGAGGGAACAACCAATTCATTCCTGAAAGCCAGGCCTCGG
Seq A exon
GACCTGATGACATTTGAAGATGTGGCTGTGGAATTCAGCCAGTGGGAGTGGGGGCAGCTGAACCCTGCTCAGAAGGACCTCTACAGGGAGGTGATGCTGGAGAACTTCAGGAACTTGGCCATTCTGG
Seq C2 exon
GCCTTCTAGTATCCAAACCATATGTGATCTGCCAGTTGGAGGAAGGGGGTGAGCCCTTCATGGTGGAGAGAGAAATCTCAACAGGAGCCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144026-'4-7,'4-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTTCTCAGAATCCTGCT
R:
TGAGTGGGCTCCTGTTGAGAT
Band lengths:
182-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)