BtaEX0041384 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003447 | ZNF551
Description
zinc finger protein 551 [Source:HGNC Symbol;Acc:HGNC:25108]
Coordinates
chr18:65317391-65344824:+
Coord C1 exon
chr18:65317391-65317517
Coord A exon
chr18:65339953-65340147
Coord C2 exon
chr18:65343512-65344824
Length
195 bp
Sequences
Splice sites
3' ss Seq
GTCTGACCACATGTGCACAGAAA
3' ss Score
3.08
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGCAGTGTGACCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGAGTCTCCTTGATGATGCTCAGAGACGCCTGTACCACAGTGTGATGCTGGAGAACTTGGCACTTATAATCTCCTTGG
Seq A exon
AAAGTCTCCTCGGAGGTCAAAGGGGAGTGATGTTAACTAATGCCAGGCTACCCACGGGCCTCTTCGCTGGAACCCATCTTGGCTACGACGAGTGCGCACATCCAGGAGAATCCTGAGATGCACCAAATACGGCCTGTGAACCAGGCAAATCAAAATGACCCGCCGAAGGAAACCCGGAAGAAATGCCCCGACTAA
Seq C2 exon
GCTATGCTGCGTGGGGGACAGCAAAACGGACAAACCATCAGCAACTTCCAGAACAGCCAGCTTACAAGCACGGGGCCTGGGTGCAGCCAGTATGTTTAAACAGCTTCAGAGAGACCAAACGAACCACATCTAGAATGTGGTAAATTCTACTGGAAGGATGGATGAAACTTATGAAACATAGAAGCTTCTAAAGATGTGTTTTGCAAGCAGCTTGGGATACCTCAGTACTGTATTTTGTGTATAAGTTACCTGGAGCAATGAAGATTCTTTATCTTAGAGTGGTCCCGAGATGTTAGGTGTTACAATCCACTATTATAGTGGGCCTAGTGAGCTAGATGAAGGCAGAGTGAAAGCTTCAGAAAGCTGAAGCTCCCGTCACCCACTCCTTTCCAGCGGTTATGACATAAGGCTTTATTTGTAACAGCCAAAACCGGGAACAAGCCAATGTGCAATCAGGTGGGTAAACAAACGGTGCCTCTATAGAGGAACACTCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003447_MULTIEX1-4/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCTGGAGAACTTGGCAC
R:
GGTATCCCAAGCTGCTTGCAA
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development