BtaEX0041381 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003447 | ZNF551
Description
zinc finger protein 551 [Source:HGNC Symbol;Acc:HGNC:25108]
Coordinates
chr18:65317391-65333008:+
Coord C1 exon
chr18:65317391-65317517
Coord A exon
chr18:65320286-65320393
Coord C2 exon
chr18:65332877-65333008
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCACTATCTTCAATGTGCAGGTA
3' ss Score
7.83
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGCAGTGTGACCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGAGTCTCCTTGATGATGCTCAGAGACGCCTGTACCACAGTGTGATGCTGGAGAACTTGGCACTTATAATCTCCTTGG
Seq A exon
GTATATATGATTTCTTTGTTGAGTGCAACAACACTGGAGGAAATCCCTTATGAAGATGCCGTTTGCCTGTTTTAAACCTCATTCATCCAGACATCCACTTAACTTCAG
Seq C2 exon
TGCTCTGAGTTGGCTGAAGTACTTCAGTGTGTCTTGAATTTGCAGTTTCTTTGGAGGAGACACATTCTCAGAGAATGGATGTTGAGTCTGGTCGTTCAAATCTCTGGCATTGTCAGCCTTCTCAGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003447_MULTIEX1-1/6=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAGGATGTGGCTGTGT
R:
CTGGAATCTGAGAAGGCTGACA
Band lengths:
249-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development