HsaEX0073878 @ hg19
Exon Skipping
Gene
ENSG00000183647 | ZNF530
Description
zinc finger protein 530 [Source:HGNC Symbol;Acc:29297]
Coordinates
chr19:58084434-58124285:+
Coord C1 exon
chr19:58084434-58084466
Coord A exon
chr19:58118612-58119195
Coord C2 exon
chr19:58123871-58124285
Length
584 bp
Sequences
Splice sites
3' ss Seq
ACAGTTCACACTGGAGAAAGGCC
3' ss Score
-6.99
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TAAAAGATTTCCCACATTCACTGCACTCATAAG
Seq A exon
GCCTTATGAATGCAGTGAATGTGGAAAATCCTTTAGCCAAAGCTCTGGCCTCTTAAGACACAGAAGAGTTCATGTGCAGTGAATGTGGGAAATTATTTTGTCACTTTTTTTTTTTTTTTTGAGATGGAATTTTGCTCGTCACCCAGGCTGGAGTGCAATTGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCTGGGATCAAGTGATTCTCCTGCCACAGCCTCCTGAGTACCTGAGATTACAGGCACCCACCACCATGCCCAGCTAATTTTTGTATTTTTAATAGAAACAAGGTTTCACCATGTTGGTCAGGCTGGTGTTGAACTCCTGACCTCAGGTAATCCACCTGCTTCAGCCTACCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGTCCGGCTTGTGTTGTGACATTTAACACAAGATTTCCCAAAGAAGAAAGGCCTTATATATGCTGTGAATGTGTTTTTGCTTGTTAGTTTGTTTTAACTTGGTATGACGGCACTGGAGGCTAGCCTTTGAGAAGAGCCTTCTCTGATGTGACTCATGTATCCAAACATCCATGGATTTCCCATAAATTTGAG
Seq C2 exon
GTATTATTGAGTGTTTTCAAGAATGAAAAGAGGCCTGGCATGGTGGCTCACATCTGTAATCCCAACTTTTTGGGAGGCTGAGGTGGGAGGATCCCTTGAGCCCAAGAGTTTGAGGCTGCAGCAAGCTATGATCGTGCCACTACACTCCAGCCTGTGCAACACAGTGAGATCCTGTCTCCAAAATTAAATAAATAAATAAAATTACATTTTGGAGACTAAACGCTGCTTGTAGTCATAGTTCTAACACAGCTGTGTGCTCAGCTTCATTTGCTCACTTCTCAGAATTCAATGTCTCCTGCTCAAATTTTGCTGTCATCTTAACCGTTTTCACTTATCACAGATATGTTTCTCCAGGTCCATTTCGTCATGTATCTGTGAATAACTACAGAATTATTAACTTTGAGTAATTTGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183647_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCACATTCACTGCACTCA
R:
AGATGACAGCAAAATTTGAGCAGG
Band lengths:
343-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)