HsaINT0187170 @ hg19
Intron Retention
Gene
ENSG00000083817 | ZNF416
Description
zinc finger protein 416 [Source:HGNC Symbol;Acc:20645]
Coordinates
chr19:58089425-58090243:-
Coord C1 exon
chr19:58090040-58090243
Coord A exon
chr19:58089467-58090039
Coord C2 exon
chr19:58089425-58089466
Length
573 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TAGCCTTCCTCTTCCCGCAGGTT
3' ss Score
11.02
Exon sequences
Seq C1 exon
TGGTTCTCTACCTCGGCCCACGCCGCCTGAGTTAGAAACGCTGCCTCCGGCACAGAGCGGGGGTCGCCCCGCTGCGCATCAGCCGGTGGGTCGCTGGCGCTGGTGGCAGCCGTGCCTGGGTTCCCGCCCCGGGTCGCCCGCCGCTCCCGGCCCCGCTCCGCTCACAATCCGATGGCGGCGGCCGTGCTTAGGGATTCGACTTCG
Seq A exon
GTGAGTGCTGCGTCTCCCGGGCCTCACCTGCCCTCTCCGCCGGAAATCCAACACCCTGCATGAGGGGCGCCTGCTTGCGTCCCTGCAGCCCGACCCTAGAGTCCAGGACTATGAGGCCCTCGCGGGTGGGGCTCCCATTTACAAGCCTGGTGTCGTGGGCTGTGGAGGGTGTGGCAGGCGGAGGGGCCGGTTTCTGTGAATCTTGCTGGGACGATTGAGCCAGTAACGTTCACGCCCGAATGGTAAAATGAGGCTCTTTCTTTTCAAGACGCTGAGAGCCATGGGTGGTTGTGAACAGACGAGGCACATGGTCTGAGTTAGACTTTTCAAATTTTTTCTAAAGTTACTCAGAGTTGGAACAGCCTGGAAGGGGGATAACACCGAGGCACAGGGAAGTTGAGTCCTTGTGCAAGGTCCCACAGCAGGTAAGAGTCACACGGAACTGAGGAGCAATAATAATTTAGTCATCACCAAGTCACCTGGCTCCAGGGCTGCGCAGGGAAACAAGGAGGCATCAGCCCATGGAGCTTCCACCATAGTTACCTGCCTCTCATAGCCTTCCTCTTCCCGCAG
Seq C2 exon
GTTCCCGTGACTGCAGAAGCTAAACTTATGGGCTTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083817-ZNF416:NM_017879:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTCTACCTCGGCCCAC
R:
AAGCCCATAAGTTTAGCTTCTGCA
Band lengths:
238-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)