MmuINT0180314 @ mm9
Intron Retention
Gene
ENSMUSG00000030393 | Zik1
Description
zinc finger protein interacting with K protein 1 [Source:MGI Symbol;Acc:MGI:108070]
Coordinates
chr7:11079839-11080730:-
Coord C1 exon
chr7:11080491-11080730
Coord A exon
chr7:11079878-11080490
Coord C2 exon
chr7:11079839-11079877
Length
613 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TAACATCTCTCATCTCACAGGTG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GCGCTCTGTGGCGCTCATTTTAGCGGTTTTTGGGTCCCTCCTTCCAGATCGTGTGCAAGACCCCTTTGTCCAGAGGTGTACGGATCGAAGAATCTCAAAGGAGCGGTTCTAAGGGCGTAATATTCATCGCAGCCCCGGCACTGACAGTGGCAGTATTGTCCAGGTCCCTCGTCCCCGTTTCCCCGTTGTCTGCGCTCGCTTACTTGGATGGCTGTGCCCACGCTCATGCACCAGGCTTAG
Seq A exon
GTAAGTGGTGCGACATTTGTGGCTCCCTTGTCCTCGCCACTTATCTTGCAGAGTCGGAATTAGGGAGTCCCCTTAAGTCGCTACTCCCCAGATCCCTGTATTAGTAGGAGTACGTGATTCGGCTTTTCTATTTGCAAAGCTACAATGAGGAGGCGGAGTGGTACAGCCAGGGCCATAGTGTGTGTAATTTCTTGGAGCGACGCTGAAGTGTGGACTATTTAGGCCCGTAATAATGAGATGAAGTGTTGTACCATTTTCCCCATGACAGGAATTCGTGTTATGGAAAAACTACACAGACTTGAGTGTGGGTTTTAGGGTTTCCAAAAAGCTGCTGCTCGTGATGAGAGTATGTATGTATATATGTATGTATATTCTCATCTCAGCTAGTTCTTGGACCACCCTAGGGTTTTCCAACCTGGGAGTTGTGTGGAGATATATTATAGGCCAGTTGAGTCATTGTTCAAGGGTCCATAAGTAAGCACAAGCACTGAGGATTTAGGATCAGATGTAACGAGGGCATCCCTATGTCACTTTGCTCCGGGTTGGGAGAGGGTATAGGAAAACCTAAAGCTTTGGGTCCCTGCCATCATTCATAACATCTCTCATCTCACAG
Seq C2 exon
GTGTCCATGACTGCAGAAATGGATATGGCCCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030393-Zik1:NM_009577:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGGCGCTCATTTTAGC
R:
CTGCATGAGGGCCATATCCAT
Band lengths:
276-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: