HsaINT0185841 @ hg19
Intron Retention
Gene
ENSG00000171649 | ZIK1
Description
zinc finger protein interacting with K protein 1 homolog (mouse) [Source:HGNC Symbol;Acc:33104]
Coordinates
chr19:58095628-58096358:+
Coord C1 exon
chr19:58095628-58095757
Coord A exon
chr19:58095758-58096319
Coord C2 exon
chr19:58096320-58096358
Length
562 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGATCTTTGGCTTTCCACAGGTT
3' ss Score
10.59
Exon sequences
Seq C1 exon
GGGTTCTAAGGGTCGGCGGCGGCGGGGTTGACGGCTTTGCCTAGGTCCCTCCGCCCGTAGCTGTCGGGTCCCGGCCCCGCTCTGCCCACAGACTCCGATGGCTGCGGCCGCGCTGAGGGCCCCGACTCAG
Seq A exon
GTGAGCGCTGCCTCTACTGGGCCTCACCCTCCATCCCCAAATTAGTGCCTTCTTGGGTCACTACGGTCGAGATCCTCATGTCCAGTACAGTGGGGGCTCGTGGGTGGGGTCCCTATTTCCAGAACTTGGGTGATGGGGCACGGAAGAGGGTTACAGGCAAAGGGACCAGCGTTTCTAAACTCTTGGAGACACAGTGAAGAAGGTTCATACCTGGAGTGCCAAGGTGAGGAGTTTTCCCTCAATTCTTAGGATGCTAGGAGCCGTGGAGGGTTGTGTACAGAAGCGGCATATGGTCTGAGTTAGGTCTTTCGAAGTTTTCCAAAAACCTCATGGAGTTAGACTAGAATAGAATGGAATAACACAGAGGCACAGGGAGGTTGAGTTCTTGTGCAAGGTCCCACAGTTGCTAAGAGTTGGCACTGAGGACTGGAACGCTGAGGCTCAGAAATAATGCAGGCATCCTCAGTCCACCTGGCTCTGGCCTGGACAGGAATCCAGGGAAGCCTGAATCCGTAGAGCCCTGTATGGTCACCTGCCTTTCATGATCTTTGGCTTTCCACAG
Seq C2 exon
GTTACTGTGTCTCCAGAAACACATATGGACCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171649-ZIK1:NM_001010879:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)