MmuINT0180314 @ mm10
Intron Retention
Gene
ENSMUSG00000030393 | Zik1
Description
zinc finger protein interacting with K protein 1 [Source:MGI Symbol;Acc:MGI:108070]
Coordinates
chr7:10494490-10495394:-
Coord C1 exon
chr7:10495142-10495394
Coord A exon
chr7:10494529-10495141
Coord C2 exon
chr7:10494490-10494528
Length
613 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TAACATCTCTCATCTCACAGGTG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GGGATTTCCGGCTGCGCTCTGTGGCGCTCATTTTAGCGGTTTTTGGGTCCCTCCTTCCAGATCGTGTGCAAGACCCCTTTGTCCAGAGGTGTACGGATCGAAGAATCTCAAAGGAGCGGTTCTAAGGGCGTAATATTCATCGCAGCCCCGGCACTGACAGTGGCAGTATTGTCCAGGTCCCTCGTCCCCGTTTCCCCGTTGTCTGCGCTCGCTTACTTGGATGGCTGTGCCCACGCTCATGCACCAGGCTTAG
Seq A exon
GTAAGTGGTGCGACATTTGTGGCTCCCTTGTCCTCGCCACTTATCTTGCAGAGTCGGAATTAGGGAGTCCCCTTAAGTCGCTACTCCCCAGATCCCTGTATTAGTAGGAGTACGTGATTCGGCTTTTCTATTTGCAAAGCTACAATGAGGAGGCGGAGTGGTACAGCCAGGGCCATAGTGTGTGTAATTTCTTGGAGCGACGCTGAAGTGTGGACTATTTAGGCCCGTAATAATGAGATGAAGTGTTGTACCATTTTCCCCATGACAGGAATTCGTGTTATGGAAAAACTACACAGACTTGAGTGTGGGTTTTAGGGTTTCCAAAAAGCTGCTGCTCGTGATGAGAGTATGTATGTATATATGTATGTATATTCTCATCTCAGCTAGTTCTTGGACCACCCTAGGGTTTTCCAACCTGGGAGTTGTGTGGAGATATATTATAGGCCAGTTGAGTCATTGTTCAAGGGTCCATAAGTAAGCACAAGCACTGAGGATTTAGGATCAGATGTAACGAGGGCATCCCTATGTCACTTTGCTCCGGGTTGGGAGAGGGTATAGGAAAACCTAAAGCTTTGGGTCCCTGCCATCATTCATAACATCTCTCATCTCACAG
Seq C2 exon
GTGTCCATGACTGCAGAAATGGATATGGCCCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030393:ENSMUST00000032551:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTCCGGCTGCGCTCTG
R:
CTGCATGAGGGCCATATCCAT
Band lengths:
290-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types