HsaINT0185841 @ hg38
Intron Retention
Gene
ENSG00000171649 | ZIK1
Description
zinc finger protein interacting with K protein 1 [Source:HGNC Symbol;Acc:HGNC:33104]
Coordinates
chr19:57584142-57584990:+
Coord C1 exon
chr19:57584142-57584389
Coord A exon
chr19:57584390-57584951
Coord C2 exon
chr19:57584952-57584990
Length
562 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGATCTTTGGCTTTCCACAGGTT
3' ss Score
10.59
Exon sequences
Seq C1 exon
TTCAGTGGCGGTCATTTTTGCAGCGCTTGGGTGCATCCAGACCGTCAGAGCTTTGGGAGCGCTTTGTTTGGCGACAGTCGGAAGGCGCGAGGGGAGGGGTCCTCCCGCTGAACAGTGGGGGTTCTAAGGGTCGGCGGCGGCGGGGTTGACGGCTTTGCCTAGGTCCCTCCGCCCGTAGCTGTCGGGTCCCGGCCCCGCTCTGCCCACAGACTCCGATGGCTGCGGCCGCGCTGAGGGCCCCGACTCAG
Seq A exon
GTGAGCGCTGCCTCTACTGGGCCTCACCCTCCATCCCCAAATTAGTGCCTTCTTGGGTCACTACGGTCGAGATCCTCATGTCCAGTACAGTGGGGGCTCGTGGGTGGGGTCCCTATTTCCAGAACTTGGGTGATGGGGCACGGAAGAGGGTTACAGGCAAAGGGACCAGCGTTTCTAAACTCTTGGAGACACAGTGAAGAAGGTTCATACCTGGAGTGCCAAGGTGAGGAGTTTTCCCTCAATTCTTAGGATGCTAGGAGCCGTGGAGGGTTGTGTACAGAAGCGGCATATGGTCTGAGTTAGGTCTTTCGAAGTTTTCCAAAAACCTCATGGAGTTAGACTAGAATAGAATGGAATAACACAGAGGCACAGGGAGGTTGAGTTCTTGTGCAAGGTCCCACAGTTGCTAAGAGTTGGCACTGAGGACTGGAACGCTGAGGCTCAGAAATAATGCAGGCATCCTCAGTCCACCTGGCTCTGGCCTGGACAGGAATCCAGGGAAGCCTGAATCCGTAGAGCCCTGTATGGTCACCTGCCTTTCATGATCTTTGGCTTTCCACAG
Seq C2 exon
GTTACTGTGTCTCCAGAAACACATATGGACCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171649:ENST00000597850:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGCGGTCATTTTTGCA
R:
CTTTGTGAGGTCCATATGTGTTTCTG
Band lengths:
286-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains