HsaEX0072812 @ hg38
Exon Skipping
Gene
ENSG00000171649 | ZIK1
Description
zinc finger protein interacting with K protein 1 [Source:HGNC Symbol;Acc:HGNC:33104]
Coordinates
chr19:57584145-57588625:+
Coord C1 exon
chr19:57584145-57584612
Coord A exon
chr19:57584952-57584990
Coord C2 exon
chr19:57588539-57588625
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGATCTTTGGCTTTCCACAGGTT
3' ss Score
10.59
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGTGGCGGTCATTTTTGCAGCGCTTGGGTGCATCCAGACCGTCAGAGCTTTGGGAGCGCTTTGTTTGGCGACAGTCGGAAGGCGCGAGGGGAGGGGTCCTCCCGCTGAACAGTGGGGGTTCTAAGGGTCGGCGGCGGCGGGGTTGACGGCTTTGCCTAGGTCCCTCCGCCCGTAGCTGTCGGGTCCCGGCCCCGCTCTGCCCACAGACTCCGATGGCTGCGGCCGCGCTGAGGGCCCCGACTCAGGTGAGCGCTGCCTCTACTGGGCCTCACCCTCCATCCCCAAATTAGTGCCTTCTTGGGTCACTACGGTCGAGATCCTCATGTCCAGTACAGTGGGGGCTCGTGGGTGGGGTCCCTATTTCCAGAACTTGGGTGATGGGGCACGGAAGAGGGTTACAGGCAAAGGGACCAGCGTTTCTAAACTCTTGGAGACACAGTGAAGAAGGTTCATACCTGGAGTGCCAAG
Seq A exon
GTTACTGTGTCTCCAGAAACACATATGGACCTCACAAAG
Seq C2 exon
GGCTGTGTGACCTTTGAGGACATCGCCATTTACTTCTCACAGGACGAGTGGGGACTTCTTGATGAGGCTCAGAGACTCCTGTACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171649-'3-8,'3-5,4-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.2=9.1)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACAGGCAAAGGGACCAG
R:
CCCACTCGTCCTGTGAGAAGT
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development