HsaALTA1045885-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000171649 | ZIK1
Description
zinc finger protein interacting with K protein 1 [Source:HGNC Symbol;Acc:HGNC:33104]
Coordinates
chr19:57584952-57588615:+
Coord C1 exon
chr19:57584952-57584990
Coord A exon
chr19:57588539-57588580
Coord C2 exon
chr19:57588581-57588615
Length
42 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACCTGTCCCCATCATGACAGGGC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTTACTGTGTCTCCAGAAACACATATGGACCTCACAAAG
Seq A exon
GGCTGTGTGACCTTTGAGGACATCGCCATTTACTTCTCACAG
Seq C2 exon
GACGAGTGGGGACTTCTTGATGAGGCTCAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171649-4-9,4-8,4-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACTGTGTCTCCAGAAACACA
R:
TGAGCCTCATCAAGAAGTCCC
Band lengths:
68-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains