HsaEX0073878 @ hg38
Exon Skipping
Gene
ENSG00000183647 | ZNF530
Description
zinc finger protein 530 [Source:HGNC Symbol;Acc:HGNC:29297]
Coordinates
chr19:57573066-57612722:+
Coord C1 exon
chr19:57573066-57573098
Coord A exon
chr19:57607244-57607827
Coord C2 exon
chr19:57612503-57612722
Length
584 bp
Sequences
Splice sites
3' ss Seq
ACAGTTCACACTGGAGAAAGGCC
3' ss Score
-6.99
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TAAAAGATTTCCCACATTCACTGCACTCATAAG
Seq A exon
GCCTTATGAATGCAGTGAATGTGGAAAATCCTTTAGCCAAAGCTCTGGCCTCTTAAGACACAGAAGAGTTCATGTGCAGTGAATGTGGGAAATTATTTTGTCACTTTTTTTTTTTTTTTTGAGATGGAATTTTGCTCGTCACCCAGGCTGGAGTGCAATTGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCTGGGATCAAGTGATTCTCCTGCCACAGCCTCCTGAGTACCTGAGATTACAGGCACCCACCACCATGCCCAGCTAATTTTTGTATTTTTAATAGAAACAAGGTTTCACCATGTTGGTCAGGCTGGTGTTGAACTCCTGACCTCAGGTAATCCACCTGCTTCAGCCTACCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGTCCGGCTTGTGTTGTGACATTTAACACAAGATTTCCCAAAGAAGAAAGGCCTTATATATGCTGTGAATGTGTTTTTGCTTGTTAGTTTGTTTTAACTTGGTATGACGGCACTGGAGGCTAGCCTTTGAGAAGAGCCTTCTCTGATGTGACTCATGTATCCAAACATCCATGGATTTCCCATAAATTTGAG
Seq C2 exon
GTATTATTGAGTGTTTTCAAGAATGAAAAGAGGCCTGGCATGGTGGCTCACATCTGTAATCCCAACTTTTTGGGAGGCTGAGGTGGGAGGATCCCTTGAGCCCAAGAGTTTGAGGCTGCAGCAAGCTATGATCGTGCCACTACACTCCAGCCTGTGCAACACAGTGAGATCCTGTCTCCAAAATTAAATAAATAAATAAAATTACATTTTGGAGACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183647_MULTIEX1-6/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENST00000597864fB8172
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- HsaALTA1045885-1/3
- HsaALTA1045885-2/3
- HsaALTA1050469-2/3
- HsaALTA1050469-3/3
- HsaALTD1035786-1/2
- HsaALTD1035786-2/2
- HsaALTD1053787-1/2
- HsaALTD1053787-2/2
- HsaEX0072811
- HsaEX0072812
- HsaEX0073618
- HsaEX0073876
- HsaEX0073877
- HsaEX1045205
- HsaEX1045206
- HsaINT0185841
- HsaINT0185842
- HsaINT0187170
- HsaINT0187547
- HsaINT0187548
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCCCACATTCACTGCACT
R:
AGACAGGATCTCACTGTGTTGC
Band lengths:
206-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development