HsaINT0187547 @ hg38
Intron Retention
Gene
ENSG00000183647 | ZNF530
Description
zinc finger protein 530 [Source:HGNC Symbol;Acc:HGNC:29297]
Coordinates
chr19:57599885-57604406:+
Coord C1 exon
chr19:57599885-57600134
Coord A exon
chr19:57600135-57604276
Coord C2 exon
chr19:57604277-57604406
Length
4142 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATGAACTGTCCCCATCATAGCAG
3' ss Score
4.73
Exon sequences
Seq C1 exon
GGAACTTCCGGCGTCCTCCCTGTGGCGGGCACTTTGGCTTGTGTCAGTTCCATCCGCGGGTGCCGGATCTGGACCTAGGTGCTGACAGCGAGAAGGCGCGAGGAGAGTCGTTTTCTCAGCTGCACAGCCGGGGCCTGACGGTCGCCGGCGGTGGTGACAGCTTTGCTCTTGTCTCCGCCCGGATCGTCCACCGCTCCCGGCCCGCTCCGCCCAGAGTCCGATGGCGGCGGCACTGAGGGCCCCGACCCAG
Seq A exon
GTGAGCGCTGCGTCCTCCCGGCCTCCTCTGCCCTCCCCACCCGAAACTGAGGGACGCGTGAAGGGTTTTCTGCAGCCCGGACCGCACTGTCCGGCACAGTGAGGCGCTGGTGCTGGATCTCGTTTCTGGTAGTGTGGCAGGGAGCGGGAGAGCGACACGGTCAGGGGGCTGCGCGGGCAACAGCTTGGAGCTGCGCCTGAGCCGGGAGGCTGGGGAGACCCAGGCCGGCCTCACGCGTGCAGGTAGCAGAGGGTGGGGCAGCGCCGCGCTGCATTGGCCCCACTGAGTTTCACCAGCACACTGAGGGCCACAGCGCGTAGGACAGAAGAGGGGCACGGCCCCAGTCACGCTTCTAAAAGTTTCACAAAAGCTGTTCAGAGGAACGCGCTGGAAGGGCAGTGATGATAGCAGGCATGGAGGGACCTAGTCTTTTTACGAGGTCACAAAGCTGGTAAAAGTCAGCACCAAGGACTGACACCCAGATACAAAGCAGTCATCCCTGGACACCTGGCTCTGGTGTTCCACATTGGAACCAGAAGTCCATGGAGCCACACTTTGGTCACCTGCCTCTCAGAACATGTTTCCTCCCACAGATTGCCACTAGTACTTACAGGTCCGTAAGAAGCACTTGAAGACCCTACAAGGGTAAGTGGAGGAAATCCAGAAGCTCATTGATTCCAGCAATGGGATCTCTAGGATTGGGACTGTGGTGACCTGGGATTCTTTACTTACCGCTTTTCCAGGCCTTGAGCCTAGGGACTCTGAACAAAAATATGTCCAGGGTGAGTATTATATGAGGTGGTGCCTGTTGCTGGCAAATAATAGGATGAATGTGGAAGTTTGTCCCAGAGATAAGTACAGGTGTTTGGAGCTGCTTGGAGGTGAGGCTGAGCTGGTTAAGAGAACCTCAAGTCTCATTTCCTTCTCATGGGAACAGAGAGCAGAGGTACAGGAGTTAGAAACTAAATGGCTGTCTCAGATGTCTTTGTTCTGGAGATGATGGCAGCAATGAAGATTTGGAGCAGAAGAGGGAGGTGATCTTCCCCAGGCCTCATGAGGCTCCTGTGGCTGAGCACAGACAACAGACTGTGGGTTTAAGGGAGTTGGTAGCAATACCAAAGAGGAAAGAGGAGACTACTGCAATAGTCCAGGTGAGTGTAGATGATGTGGGCCAGAGTAGTGGCCACAGTGTGGCAGAAATGGTTGAATTTTGGATTGTAGGTCGGCTCTGATTTTCTGGTATTGGGACTGAGAGATAAGAAGGGGTGACTCAAGGCTTTTTGAGTTTAGTAGCTGGAAGCATAGAAGCTCCATCTACTGGGAGAGCCAAGTAGATAGTAGAATTGTTTTTCACTCAGGACATCAGGAATGTGTTTTGTCCATGTTAAAAATATGAGATGTTTTAGAGAATAAGTAAGTAGCTATATCAAGTGGCTAGGTGGACACACAGGTCTTGGACTCTGAGGAAGGGTGCAGGATAGAGACTTCTACAAAGAGTGGAGGATATTATTGAACTAGGATGGAGCCCTATGTCTGTTAGGCCATTTGCATTACTATAAAGAAATACCTAAGGCTGGGTAGTTTATAAAGAAACAAGGTTTATTACAGCTTATAGTTCTGCAGGCTGTACAGGAAGCTTAGCGCTAGTCTCCACTTCTGGTGAGGGCCTCAGGAAGCTTCCAATCATTGCAGAAGGCAAAAAGGGAGCCAGCAAGGCAGGAGGGAGGCACCAGTCTCTTTTTAGCAACCAGGTCTCATGTGAACTTATTACTGTTGGAAGGATACTATGCCATTCATGAGGGATCCACCTCCATGACCCAGATAACCTCCCACTAGGCCCCACTTCCAACATTGGGGATCACATTTCCAGGTGAGATTTGAAGGGGACAAATATCCAGGCTATATCAGTGTCTTACCTTGGGTTGATAATGAAATAACCTATATTGGTGGCTTAAACAACAAAAATTTGTTTCTCACAGTTCTGCAGGCTAGGAAATTCTACATCAGGGTGCCTCTAGATTCACTTATTTGTGATGGGCTGCTTCTTGACTTGCAGTGGCTGCCCTCTTGCTTTTTCCTCACATGGCCTTTCCTGGGAGGGAGTATGTAAAGAAAGCAAGGAATCTCTTTCTTTCTATTCTTACAAAAGCATTAATTCCATCATGAGGGCCCCACTCTTTTGACCTTATCTAAATCTAATTACCACCCAAAGATTCCATCTCCAAATACTATCACATTATATTAGGCTTCATTGTGTTAGTGCTTCAATGTAAGCATTTTGTGGGTGGGCGTGGGGCAGAAACATTAAGCCCATAACATCATAGATCCCATTTAGTAGTGGGATTCCTGGTCATGATGATAATATTAATAGCAGGCCAGGAAGGGGAAGGGTGGGAGCCACAAGAGGGTACCATACTTGGGTATCTGGATGGATGTTGTGGAAATCACAAATACAGGTTATAGAGGGAAGCAGCCCTAGGAATAATACAGAGAGAGGATACCAGGCAGGTGGCCAAGGGTTATGAAGGATGAGTGAATATAAGATGGATGTGGAGGCTGCATTAGTCCATTTTCGTGCTGCTGATAAAGACATACCTGAGACTGGGAAGAAAAAGAGGGTTAATGGACTTGCAGTTCCACATGGCTGGGGAGGCCTCACAATCATGGTGGAAGGCAAGGAAGAGCAAGTCACATCTTACATGGATGGCAGCAGGCAAAAAGAGAGTTTGTGCAGGGGAACTCCTCTTTTTAAAACCATCAGTTCTTCTTTTTTTGAGATGGAGTCTTGCTCTGTTCCCCAGGCTGGAGGGCAGTGGTGAGATCTCAGCTCCCTACAGCCTCCACCTCCCAGACTCAAGGGATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATCCACCACCACACCCAGCTAATTTTCGTATTTTTAGTAGAGACGGGGTTTCACCACATTGGCCAGGCTGGTCTCAAGCTCCTGATCAAGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTAGAGGCGTGAGCCACTGCAACCAGCCTTAAAACCATCAGTTCTCGTGAGACTTATTCACTATTGCGAGAACAGCACAAGAAAGACCCACCCCCATGATTCAGGTACCTCCTACTGGATCCCTCCCATGACACATGGGAATTGTGGGAGTTACAATTCAAGATGAGATTTGGGTGGAGACACAGCCAAACCATATTAGAGACATAATGGGATTTCAGACAAGATGAGGCTGAAGCCAGACCTAATGCTTTACTGCTATATAGCCTCACCAGGATCTTATGACTGGCTCCTATGCCTAGGGAGTTTCATGCAGGCTGGTGGATCAGTTTAGGGGCAGAAGTAGTCATCTGGGAGCATCACTTAACCTTGGGTGGAGGGCCACCAGGCAAGGTTTTGAATGAAGGGTAGCAAGACAGTTACTGTTACTGTTACTGTTTAGTGCAGTTACTGTTTAGTGCAGTACAAGTTGGAAAGGGCCATGTGTATCTGAGATATGTATGTGGTTCTGGGTGGCTGAGGTTGATGAAAGGAGTAGACTCAGGTAGGAAGGGCTTCAGAGCAGGATATGGGGCTGCCTGTGGCAGTAGGGACCATCATAGGTCTGGGTAGTCCTGGAACTTGTTTGAATTTGCAAGCACTTTCTAGATGTCTTGTGCTGAGTAACATATAGGAAGGCAGGAGAGATGCCTGTGTTGTGGGATCGGGGTGGAGGTGGCTGAGGGAGTGAGTTGGGTAAGAGAGGTGTGGTGGAAAGAGTGATGCACATATGAAGACGGAGTGTGAGCTTTTGTTTCATGAGTCTGGACATTGAGGACATGAGGGTGAAATGTGAACCCAGACCTTCAGTTGTGTTTGGGAGCCATGGTCTGAGGGATTCCAGGAGAATTTATAGACACAAGAATGTGGTTTCTATCTGTCCACCTGCCTGTTGTTGCTGTGGGAGAACACAGTGACCAATGAGACCATGAGAGAGTAGGCATCAGTGGCATCAGGGCCTGTTGTATTCGCTGAGGTGGGGAGATGGGGAGGAGGGTGAGCCAGGGATGGATGTTTGGGGGAATCAACTTGGGGTCCTAGGAAAGATGCTGACCATGGAATGAACTGTCCCCATCATAG
Seq C2 exon
CAGGTTTTTGTAGCCTTTGAGGATGTGGCCATTTACTTCTCCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCAGTTATGGCATCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183647:ENST00000332854:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains