HsaEX1045205 @ hg38
Exon Skipping
Gene
ENSG00000183647 | ZNF530
Description
zinc finger protein 530 [Source:HGNC Symbol;Acc:HGNC:29297]
Coordinates
chr19:57600728-57604406:+
Coord C1 exon
chr19:57600728-57600779
Coord A exon
chr19:57601114-57601285
Coord C2 exon
chr19:57604277-57604406
Length
172 bp
Sequences
Splice sites
3' ss Seq
AAACTAAATGGCTGTCTCAGATG
3' ss Score
3.08
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTGCCACTAGTACTTACAGGTCCGTAAGAAGCACTTGAAGACCCTACAAGG
Seq A exon
ATGTCTTTGTTCTGGAGATGATGGCAGCAATGAAGATTTGGAGCAGAAGAGGGAGGTGATCTTCCCCAGGCCTCATGAGGCTCCTGTGGCTGAGCACAGACAACAGACTGTGGGTTTAAGGGAGTTGGTAGCAATACCAAAGAGGAAAGAGGAGACTACTGCAATAGTCCAG
Seq C2 exon
CAGGTTTTTGTAGCCTTTGAGGATGTGGCCATTTACTTCTCCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCAGTTATGGCATCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183647_MULTIEX1-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACTAGTACTTACAGGTCCG
R:
AGGGATGCCATAACTGCAAAGT
Band lengths:
178-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains