HsaALTA1050469-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000183647 | ZNF530
Description
zinc finger protein 530 [Source:HGNC Symbol;Acc:HGNC:29297]
Coordinates
chr19:57600728-57604406:+
Coord C1 exon
chr19:57600728-57600779
Coord A exon
chr19:57604277-57604321
Coord C2 exon
chr19:57604322-57604406
Length
45 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATGAACTGTCCCCATCATAGCAG
3' ss Score
4.73
Exon sequences
Seq C1 exon
ATTGCCACTAGTACTTACAGGTCCGTAAGAAGCACTTGAAGACCCTACAAGG
Seq A exon
CAGGTTTTTGTAGCCTTTGAGGATGTGGCCATTTACTTCTCCCAG
Seq C2 exon
GAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCAGTTATGGCATCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183647-1-6,1-5,1-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTAGTACTTACAGGTCCG
R:
AGGGATGCCATAACTGCAAAGT
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains