HsaEX0073876 @ hg38
Exon Skipping
Gene
ENSG00000183647 | ZNF530
Description
zinc finger protein 530 [Source:HGNC Symbol;Acc:HGNC:29297]
Coordinates
chr19:57573066-57607827:+
Coord C1 exon
chr19:57573066-57573098
Coord A exon
chr19:57604277-57604406
Coord C2 exon
chr19:57607244-57607827
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATGAACTGTCCCCATCATAGCAG
3' ss Score
4.73
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
TAAAAGATTTCCCACATTCACTGCACTCATAAG
Seq A exon
CAGGTTTTTGTAGCCTTTGAGGATGTGGCCATTTACTTCTCCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCAGTTATGGCATCCCTAG
Seq C2 exon
GCCTTATGAATGCAGTGAATGTGGAAAATCCTTTAGCCAAAGCTCTGGCCTCTTAAGACACAGAAGAGTTCATGTGCAGTGAATGTGGGAAATTATTTTGTCACTTTTTTTTTTTTTTTTGAGATGGAATTTTGCTCGTCACCCAGGCTGGAGTGCAATTGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCTGGGATCAAGTGATTCTCCTGCCACAGCCTCCTGAGTACCTGAGATTACAGGCACCCACCACCATGCCCAGCTAATTTTTGTATTTTTAATAGAAACAAGGTTTCACCATGTTGGTCAGGCTGGTGTTGAACTCCTGACCTCAGGTAATCCACCTGCTTCAGCCTACCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGTCCGGCTTGTGTTGTGACATTTAACACAAGATTTCCCAAAGAAGAAAGGCCTTATATATGCTGTGAATGTGTTTTTGCTTGTTAGTTTGTTTTAACTTGGTATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183647_MULTIEX1-3/6=C1-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENST00000597864fB8173
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
- HsaALTA1045885-1/3
- HsaALTA1045885-2/3
- HsaALTA1050469-2/3
- HsaALTA1050469-3/3
- HsaALTD1035786-1/2
- HsaALTD1035786-2/2
- HsaALTD1053787-1/2
- HsaALTD1053787-2/2
- HsaEX0072811
- HsaEX0072812
- HsaEX0073618
- HsaEX0073877
- HsaEX0073878
- HsaEX1045205
- HsaEX1045206
- HsaINT0185841
- HsaINT0185842
- HsaINT0187170
- HsaINT0187547
- HsaINT0187548
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCACATTCACTGCACTCA
R:
GCTGTGGCAGGAGAATCACTT
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development