HsaEX0073876 @ hg19
Exon Skipping
Gene
ENSG00000183647 | ZNF530
Description
zinc finger protein 530 [Source:HGNC Symbol;Acc:29297]
Coordinates
chr19:58111253-58115774:+
Coord C1 exon
chr19:58111253-58111502
Coord A exon
chr19:58112096-58112147
Coord C2 exon
chr19:58115645-58115774
Length
52 bp
Sequences
Splice sites
3' ss Seq
GAACATGTTTCCTCCCACAGATT
3' ss Score
10.22
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAACTTCCGGCGTCCTCCCTGTGGCGGGCACTTTGGCTTGTGTCAGTTCCATCCGCGGGTGCCGGATCTGGACCTAGGTGCTGACAGCGAGAAGGCGCGAGGAGAGTCGTTTTCTCAGCTGCACAGCCGGGGCCTGACGGTCGCCGGCGGTGGTGACAGCTTTGCTCTTGTCTCCGCCCGGATCGTCCACCGCTCCCGGCCCGCTCCGCCCAGAGTCCGATGGCGGCGGCACTGAGGGCCCCGACCCAG
Seq A exon
ATTGCCACTAGTACTTACAGGTCCGTAAGAAGCACTTGAAGACCCTACAAGG
Seq C2 exon
CAGGTTTTTGTAGCCTTTGAGGATGTGGCCATTTACTTCTCCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCAGTTATGGCATCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183647-'0-1,'0-0,1-1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.583 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0),PF0006814=Phospholip_A2_1=PU(60.6=95.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACAGCTTTGCTCTTGT
R:
AATGGCCACATCCTCAAAGGC
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)