MmuEX6008382 @ mm10
Exon Skipping
Gene
ENSMUSG00000030393 | Zik1
Description
zinc finger protein interacting with K protein 1 [Source:MGI Symbol;Acc:MGI:108070]
Coordinates
chr7:10487229-10494528:-
Coord C1 exon
chr7:10494490-10494528
Coord A exon
chr7:10492279-10492405
Coord C2 exon
chr7:10487229-10491008
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAACTGTCCCTATTATGCAGGGC
3' ss Score
6.69
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGTCCATGACTGCAGAAATGGATATGGCCCTCATGCAG
Seq A exon
GGCTGTGTGACCTTTCAAGATGTGGCCATTTGCTTCTCCCATGAAGAATGGAGACTTCTTGATGAGACTCAGAGGCTCCTGTACCTCAGTGTTATGCTGCAGAACTTTGCACTCATAAACTCCCAGG
Seq C2 exon
GTTGTGGGCATAAAACAGAAGATGAAGAGCGAAGGGTTTCTACACGAGCGTCAAAGGGTTTGAGATCCGAGACCACACCGAAAACTAACCTCTGTGAAAAGTGTGTCCCGATTCTGCAAGACATTTTGTGCCTGCCTGGTCTACCTGGGCAGAAACATAGTACAGAGGCAAGTTCAAAAGTTGATCAGCACCAAGACCATAATAGTACAGGAAAACCCTTGGAGAAGAATGCTGACAGGTCTTCATACCTGTTCTACCTGTCAGCAAAGTCCTTCCCCAGTTGGGATGTTGAAAAAGACCTCCCAGATATACTGAGCCTTCTGAAGTCTCAGGTCTGTCCCAAAACTAAGAAGTACAGAAAAAGCACTGAGGGTAGGAAAGAAACAAGTCATGAAAGTGACAAGTCAGAAGAGTGTCAGAGCCTTTCCAGTCAAAAGCAAACACTTGCTCACCACCCAAAAACCTCCAATGGAAAGAAACTTTATGAGTGCAGCAAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030393-'1-4,'1-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3)
Main Skipping Isoform:
ENSMUST00000032551fB4735
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATATGGCCCTCATGCAG
R:
GTCAGCATTCTTCTCCAAGGGT
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types