MmuEX6008382 @ mm9

Exon Skipping

Gene

ENSMUSG00000030393 | Zik1

Description

zinc finger protein interacting with K protein 1 [Source:MGI Symbol;Acc:MGI:108070]

Coordinates

chr7:11072578-11079877:-

Coord C1 exon

chr7:11079839-11079877

Coord A exon

chr7:11077628-11077754

Coord C2 exon

chr7:11072578-11076357

Length

127 bp

Sequences

Splice sites

3' ss Seq

AAACTGTCCCTATTATGCAGGGC

3' ss Score

6.69

5' ss Seq

AGGGTAAGG

5' ss Score

9.16

Exon sequences

Seq C1 exon

GTGTCCATGACTGCAGAAATGGATATGGCCCTCATGCAG

Seq A exon

GGCTGTGTGACCTTTCAAGATGTGGCCATTTGCTTCTCCCATGAAGAATGGAGACTTCTTGATGAGACTCAGAGGCTCCTGTACCTCAGTGTTATGCTGCAGAACTTTGCACTCATAAACTCCCAGG

Seq C2 exon

GTTGTGGGCATAAAACAGAAGATGAAGAGCGAAGGGTTTCTACACGAGCGTCAAAGGGTTTGAGATCCGAGACCACACCGAAAACTAACCTCTGTGAAAAGTGTGTCCCGATTCTGCAAGACATTTTGTGCCTGCCTGGTCTACCTGGGCAGAAACATAGTACAGAGGCAAGTTCAAAAGTTGATCAGCACCAAGACCATAATAGTACAGGAAAACCCTTGGAGAAGAATGCTGACAGGTCTTCATACCTGTTCTACCTGTCAGCAAAGTCCTTCCCCAGTTGGGATGTTGAAAAAGACCTCCCAGATATACTGAGCCTTCTGAAGTCTCAGGTCTGTCCCAAAACTAAGAAGTACAGAAAAAGCACTGAGGGTAGGAAAGAAACAAGTCATGAAAGTGACAAGTCAGAAGAGTGTCAGAGCCTTTCCAGTCAAAAGCAAACACTTGCTCACCACCCAAAAACCTCCAATGGAAAGAAACTTTATGAGTGCAGCAAATGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000030393-'1-3,'1-2,3-3=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.234

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF132401=zinc_ribbon_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=6.3),PF0013017=C1_1=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF0013017=C1_1=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3)

Main Inclusion Isoform:

ENSMUSP00000032551