RnoEX0001255 @ rn6

Exon Skipping

Gene

ENSRNOG00000047230 | AABR07002134.1

Description

zinc finger protein 551 [Source:NCBI gene;Acc:682964]

Coordinates

chr1:66895752-66904539:+

Coord C1 exon

chr1:66895752-66895790

Coord A exon

chr1:66898942-66899065

Coord C2 exon

chr1:66900353-66904539

Length

124 bp

Sequences

Splice sites

3' ss Seq

AATTGTTTCCAATGTGATAGGAT

3' ss Score

4.91

5' ss Seq

TGGGTAAGG

5' ss Score

9.08

Exon sequences

Seq C1 exon

GTTCCCCTAATTTCAGAACCAGTTATGGAGGTTGGCCTG

Seq A exon

GATGTGTCCTTTGAGGATGTGACCATTCACTTCTCCCAGGAAGAGTGGGTGCTCCTTGATAAGGCCCAGAGACTCCTGTACTGCAATGTGATGCTGGAAAACTTGGCACTTGTGGCATCTCTGG

Seq C2 exon

GTTCCTGCACTGGAATGGGGAGTAAAGAGGTAACTTGTGAGCCTAATGCACCTGCAGAAGGGGTGGTATGTAACAAAAGTCCAATTCCCCAGGAGAGTCATCTCTTTGAGATACCTGTCCCAGCTTTGGAAGACATTGTGCACCAGACTGAGTTCCTAAGCACACATCCTGTTCTGACATTGGGCTCAGGCAGAACAGGTTCCTGTTTAAATGAAGACAATAACCAGTATCAGAAGAGTTACAGTGGAGGAAAGTCCTGTGAAAGGGATCCTGACAAGGCTTCAGCTATGTCAAGCTGCATATCCCATGTGTTGACCAAGCCATTCATCTGTGGGAAGGATGGGGAGGAGGCCCTCACCTCTACAGTCTGTCTTCAGCAACAGGGTGCTTGTCATAGTGAACAGCCCTCCACAGGCTGTCTTCAGCAGCAGGACACTTGTAGTAATGAACAGCCTCACAGCAGCAGCAAGAGTGGGGAAGCACTTTTGAATGGAAAGAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000047230_MULTIEX1-2/2=1-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

In the CDS, with uncertain impact

No structure available

Features

Disorder rate (Iupred):

C1=NA A=0.000 C2=0.077

Domain overlap (PFAM):

C1:

NA

A:

NO

C2:

PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF0009621=zf-C2H2=WD(100=3.8)

Main Inclusion Isoform:

ENSRNOP00000064038