BtaEX0001187 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr18:65379037-65448076:-
Coord C1 exon
chr18:65447730-65448076
Coord A exon
chr18:65445814-65445943
Coord C2 exon
chr18:65379037-65380346
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTTTACTCTGTCTCTCATAGAAG
3' ss Score
7.92
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTGTGCCCAGTTGAGCCAATGACAGGACAGCATAAAGGTATTTCCGGGTCTATGGCTCTCTTTGGGGGCGGGACTTCCGGCGTCCTCCTCCTGGCGGCCATTTATATTACTTTCCTGTGTGTTGTCGCTCGGGGCGCTACGTTGGGAATGAGGTGACTGAATTAAGACGGTCCAAGAGGCAGCGCACAGAGGCGGGTCTCAAGTTCAGCGACGCCGTCAGGGGACCCCCGCGCTAGGCCCCCAATCGCGCCCGCTGTGCCCGCTTCCCGCCTCCTCTCCCGCCGCTCGCGGTCCTGCTCTGGCCACAGAGTCCGATGGCGGCGGCGGCGCTGAGGGATCCGCCTCAG
Seq A exon
AAGTGCAGTGTGACCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGAGACTCCTTGCTGAGGCCCAGAGAAGCGTGTACCTCGATGTGATGCTGGAGAACTATGCACTTATAGCTTCACTGG
Seq C2 exon
CATATTGGCTGGGTGAAGTTGCTTTCAAATGGAGAAGAAGAAGTCCTAAAAATTGACTGACTTCTGGAAGCTTTAGAAGACTGGAAGAACTGAAGGGATGTCAAGAATTCTGTGTGTGGGTATGTGTACGTAAGATAAAGCCAGGAAAGTATGTGATAACTTCTGACAGGTTTTGATGGAAACACCAAAGGAGAGAGATTTTCCAGAAGAGACATGATGTGTCACTGTGTATTCATGTAGGAGAAATGATAAGATTCCTTAAAAAATTCAATTAAAACAAATTGATTTTATTAAAAATTATTTTTAACCCTTTTAGTTTTAAGTATTAAATAAGTATTTTTAATATAAGTAATGTTTAGCAAAATTTGACAGCCATTAGCACCTAAAAGGAGAAGGCAGTGTCTTCAGAATAATTATTCTGGTCACATGCTCAGCTTAATTGTATCTCTTCTCAGACATCACTGCTAAAACTTCTCTAAGATTTTCACATTTTTAACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038088_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=97.6)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCTACGTTGGGAATGAG
R:
TGAAAGCAACTTCACCCAGCC
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development