HsaEX0074158 @ hg19
Exon Skipping
Gene
ENSG00000083814 | ZNF671
Description
zinc finger protein 671 [Source:HGNC Symbol;Acc:26279]
Coordinates
chr19:58233684-58238995:-
Coord C1 exon
chr19:58238759-58238995
Coord A exon
chr19:58234582-58234708
Coord C2 exon
chr19:58233684-58233806
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCCCTTTTGTTGCAGGGC
3' ss Score
10.67
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTTGTAGCGGACATTTTGTTTCTGTCAGGCTGTCCCTGGCCGGGGTTCTGTAACGCTTGTGTGGGCCGCAGGTGGAGGTGTTGGGAAAGCGCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCTGCGTCCCCGATCGAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGG
Seq A exon
GGCTGTGTGGTCTTTGAGGATGTGTTTGTATACTTCTCTCGGGAAGAATGGGAGCTTCTTGATGATGCTCAGAGACTTTTGTACCATGATGTGATGCTGGAGAACTTTGCACTTTTAGCCTCACTGG
Seq C2 exon
GAATTGCATTTTCCAGATCACGTGCAGTCATGAAACTAGAGCGAGGAGAAGAGCCCTGGGTGTATGACCAGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083814_MULTIEX1-4/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGATGTTGTCCCCAGT
R:
CCTCTGGGCCTCTCTTTCTGT
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)