HsaEX0073268 @ hg38
Exon Skipping
Gene
ENSG00000152454 | ZNF256
Description
zinc finger protein 256 [Source:HGNC Symbol;Acc:HGNC:13049]
Coordinates
chr19:57940833-57947671:-
Coord C1 exon
chr19:57947442-57947671
Coord A exon
chr19:57943934-57944060
Coord C2 exon
chr19:57940833-57942647
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTGTCCCCATCCTGGCAGGGC
3' ss Score
8.6
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GGCATTTGTCTGGACTGATTACTTGGTAGAAAGCCCCGGAGCGCTGGGTCAGCATCATCCGTGACTGACTGAGAAGGCGCGAGAGGAGTCTTCCCCGCTGCACAGAGGCGTGGCTGAGGCTCGGCGGCGCCCAGGGTACCCAGGCCCGGCCCGGAATAAGGACATCCTCTCTGGCCCCGCTCCGCTCACAGAGTCAGATGGCGGCGGCCGAGCTGACGGCCCCGGCCCAG
Seq A exon
GGCATTGTGACCTTTGAGGACGTGGCTGTTTACTTCTCCTGGAAGGAGTGGGGTCTTCTTGATGAGGCTCAGAAATGCCTGTACCACGATGTGATGCTGGAGAACTTGACACTTACAACCTCCCTGG
Seq C2 exon
GTGGTTCTGGAGCAGGGGATGAGGAGGCACCTTATCAGCAGAGCACTTCTCCACAGCGGGTGTCACAGGTTAGGATTCCTAAGGCCCTTCCTTCTCCCCAGAAGACCAACCCCTGTGAGATATGTGGCCCAGTCTTGAGACAGATTTTGCACTTGGTTGAACACCAAGGAACACACCATGGTCAGAAACTGTATACAGACGGGGCATGTAGGAAACAATTACAATTTACTGCATACCTTCATCAGCACCAGAAGCAGCATGTTGGACAGAAACACTTCAGAAGCAATGGGGGCAGAGACATGTTTTTGAGCAGCTGCACATTTGAAGTATCTGGGAAGCCCTTCACTTGCAAGGAGGTTGGGAAGGATTTCCTGGTGAGATCAAGATTTCTTCAGCAACAGGCTGCTCACACCAGAAAGAAGTCAAACAGAACCAAGAGTGCAGTGGCCTTTCACAGTGTAAAAAATCATTACAACTGGGGAGAATGTGTGAAAGCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152454_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTGGTAGAAAGCCCCGGA
R:
GCTCTGCTGATAAGGTGCCTC
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development