MmuEX0053444 @ mm10
Exon Skipping
Gene
ENSMUSG00000034071 | Zfp551
Description
zinc fingr protein 551 [Source:MGI Symbol;Acc:MGI:3588205]
Coordinates
chr7:12415153-12421846:-
Coord C1 exon
chr7:12421808-12421846
Coord A exon
chr7:12418543-12418666
Coord C2 exon
chr7:12415153-12417218
Length
124 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTCCATTGTGATAGGAT
3' ss Score
6.67
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTTCCCCTGACTTCAGAACCAGTTATGGAGCTTGGCCTG
Seq A exon
GATGTGTCCTTTGAGGATGTGGCCATTCACTTCTCCCAGGAAGAGTGGGTGCTCCTTGATAAGGCCCAGAGACTCCTGTACTGCAGTGTGATGCTGGAAAACTTGGCACTTGTGGCATCTCTGG
Seq C2 exon
GTTCCTGTACTGGAATGGGGGATGAAGACGTAACTTGTGAGCCTGCAGAAGAGGTGGTGTGTAACACAAGTCCATCTCCCCAGGAGACTCATCTCCTTGAGATACCTGTCCCAGCTTTGGAAGAGGCTTGGCACCAGAATGAGTTCTTGAGCACACAGCCTGTGCAGACATTAGATTTGAGCAGAACAGGTTCCGGTTTGAAGGAAGACAGTAACCGGCATTGGAAGAGTTACAGTGGTGAAAAGTCCTGTGAAAGGGATTCTCACAGGGCTACAGCTATGTCAAGTTGCAGATCCCATGGGTTGACTGAGCCATTCATCCGTGGGAAGGATGGTGAGGAGGCCCTCTCCTCTATAGCTGGTGTTCAGCAGCAGGGTGCGTGTCATAGTGAACAGCCCTCCACAGGCTGTCTTCAACAGCAAGCCACTTGTATTCGTGAACAGCCTTATAGCAGTGCCAAGTGTGGGCAAGCACTTTTGAATGGAGAGAAACATTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034071_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGACTTCAGAACCAGT
R:
GCCGGTTACTGTCTTCCTTCA
Band lengths:
256-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types