MmuEX0053443 @ mm10
Exon Skipping
Gene
ENSMUSG00000034071 | Zfp551
Description
zinc fingr protein 551 [Source:MGI Symbol;Acc:MGI:3588205]
Coordinates
chr7:12418543-12422751:-
Coord C1 exon
chr7:12422390-12422751
Coord A exon
chr7:12421808-12421846
Coord C2 exon
chr7:12418543-12418666
Length
39 bp
Sequences
Splice sites
3' ss Seq
GAGCCTCCTCCTTTTTTCAGGTT
3' ss Score
10.57
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCGAGACGATGGGGGTGGAGTTGAGCCCGTGGAAATTCGGCATTTATTTGTATTATTATTTTTTGGGGTGTGTGTTTGTGGACTAGTGCGCGGTTCGTGTCTGGAGCTAGATTTCCAGCGTGGTCTTTTTGGTGGTCGTTTAGGCGTTTCTGAGGTTTGTTTACCTAACTGGAAGCTCGGCGAGGTGGGCAGTTCTTATGGCAGAGCGCAAAGAGCTGCTCTGTGTTACAGAGGCCCTGCTGAGGCCCAGCGACTCCGCCCACATGCCCCGAGCCAGGCCTAGGGAAGAGACCTCGGCGACCTGGTCCTTGCTTCCTCTACAGAATCCAATGGCTGTGGCCATGCACAGGAACATAGCCCAG
Seq A exon
GTTCCCCTGACTTCAGAACCAGTTATGGAGCTTGGCCTG
Seq C2 exon
GATGTGTCCTTTGAGGATGTGGCCATTCACTTCTCCCAGGAAGAGTGGGTGCTCCTTGATAAGGCCCAGAGACTCCTGTACTGCAGTGTGATGCTGGAAAACTTGGCACTTGTGGCATCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034071-'0-2,'0-0,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.329 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTAGGGAAGAGACCTC
R:
CTGGGAGAAGTGAATGGCCAC
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types