MmuEX0053443 @ mm9
Exon Skipping
Gene
ENSMUSG00000034071 | Zfp551
Description
zinc fingr protein 551 [Source:MGI Symbol;Acc:MGI:3588205]
Coordinates
chr7:13003892-13008100:-
Coord C1 exon
chr7:13007739-13008100
Coord A exon
chr7:13007157-13007195
Coord C2 exon
chr7:13003892-13004015
Length
39 bp
Sequences
Splice sites
3' ss Seq
GAGCCTCCTCCTTTTTTCAGGTT
3' ss Score
10.57
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCGAGACGATGGGGGTGGAGTTGAGCCCGTGGAAATTCGGCATTTATTTGTATTATTATTTTTTGGGGTGTGTGTTTGTGGACTAGTGCGCGGTTCGTGTCTGGAGCTAGATTTCCAGCGTGGTCTTTTTGGTGGTCGTTTAGGCGTTTCTGAGGTTTGTTTACCTAACTGGAAGCTCGGCGAGGTGGGCAGTTCTTATGGCAGAGCGCAAAGAGCTGCTCTGTGTTACAGAGGCCCTGCTGAGGCCCAGCGACTCCGCCCACATGCCCCGAGCCAGGCCTAGGGAAGAGACCTCGGCGACCTGGTCCTTGCTTCCTCTACAGAATCCAATGGCTGTGGCCATGCACAGGAACATAGCCCAG
Seq A exon
GTTCCCCTGACTTCAGAACCAGTTATGGAGCTTGGCCTG
Seq C2 exon
GATGTGTCCTTTGAGGATGTGGCCATTCACTTCTCCCAGGAAGAGTGGGTGCTCCTTGATAAGGCCCAGAGACTCCTGTACTGCAGTGTGATGCTGGAAAACTTGGCACTTGTGGCATCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034071-'0-3,'0-1,1-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTAGGGAAGAGACCTC
R:
CTGGGAGAAGTGAATGGCCAC
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: