BtaEX0041302 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037981 | ZNF416
Description
zinc finger protein 416 [Source:HGNC Symbol;Acc:HGNC:20645]
Coordinates
chr18:64980519-64981696:-
Coord C1 exon
chr18:64981664-64981696
Coord A exon
chr18:64981059-64981097
Coord C2 exon
chr18:64980519-64980645
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGACCTCCCTCTTCCCACAGACT
3' ss Score
12.62
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGCGGCCGCCGCGCTGAGGGACCCGCCTCAG
Seq A exon
ACTCCCATGAGGACAGAAGTGCTTCGGGACTCTTCAAAG
Seq C2 exon
GCCTGTGTGACCTTTGAGGACGTGGCCATTTACTTCTCCCAGGAGGAGTGGGGGCTCCTTGATGAAGTTCAGAGACACCTGTACTGCAAGGTGATGCTAGAGAACTTTGCACTGACAGCCTCGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037981_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.538 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGACCCGCCTCAG
R:
GCATCACCTTGCAGTACAGGT
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development