MmuEX0053851 @ mm10
Exon Skipping
Gene
ENSMUSG00000030393 | Zik1
Description
zinc finger protein interacting with K protein 1 [Source:MGI Symbol;Acc:MGI:108070]
Coordinates
chr7:10492279-10495394:-
Coord C1 exon
chr7:10495142-10495394
Coord A exon
chr7:10494490-10494528
Coord C2 exon
chr7:10492279-10492405
Length
39 bp
Sequences
Splice sites
3' ss Seq
TAACATCTCTCATCTCACAGGTG
3' ss Score
10.71
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGATTTCCGGCTGCGCTCTGTGGCGCTCATTTTAGCGGTTTTTGGGTCCCTCCTTCCAGATCGTGTGCAAGACCCCTTTGTCCAGAGGTGTACGGATCGAAGAATCTCAAAGGAGCGGTTCTAAGGGCGTAATATTCATCGCAGCCCCGGCACTGACAGTGGCAGTATTGTCCAGGTCCCTCGTCCCCGTTTCCCCGTTGTCTGCGCTCGCTTACTTGGATGGCTGTGCCCACGCTCATGCACCAGGCTTAG
Seq A exon
GTGTCCATGACTGCAGAAATGGATATGGCCCTCATGCAG
Seq C2 exon
GGCTGTGTGACCTTTCAAGATGTGGCCATTTGCTTCTCCCATGAAGAATGGAGACTTCTTGATGAGACTCAGAGGCTCCTGTACCTCAGTGTTATGCTGCAGAACTTTGCACTCATAAACTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030393_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGTCCAGGTCCCTCGTCC
R:
GGGAGAAGCAAATGGCCACAT
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types