HsaEX6096965 @ hg19
Exon Skipping
Gene
ENSG00000083817 | ZNF416
Description
zinc finger protein 416 [Source:HGNC Symbol;Acc:20645]
Coordinates
chr19:58087172-58090243:-
Coord C1 exon
chr19:58090040-58090243
Coord A exon
chr19:58089425-58089466
Coord C2 exon
chr19:58087172-58087298
Length
42 bp
Sequences
Splice sites
3' ss Seq
TAGCCTTCCTCTTCCCGCAGGTT
3' ss Score
11.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGGTTCTCTACCTCGGCCCACGCCGCCTGAGTTAGAAACGCTGCCTCCGGCACAGAGCGGGGGTCGCCCCGCTGCGCATCAGCCGGTGGGTCGCTGGCGCTGGTGGCAGCCGTGCCTGGGTTCCCGCCCCGGGTCGCCCGCCGCTCCCGGCCCCGCTCCGCTCACAATCCGATGGCGGCGGCCGTGCTTAGGGATTCGACTTCG
Seq A exon
GTTCCCGTGACTGCAGAAGCTAAACTTATGGGCTTTACACAG
Seq C2 exon
GGCTGTGTGACCTTTGAGGACGTGGCCATTTACTTCTCCCAGGAAGAATGGGGGCTCCTTGATGAGGCTCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCACTTATAACTGCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083817-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCTCACAATCCGATGG
R:
CATCACATCGCGGTACAGGAG
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)