RnoEX0001254 @ rn6
Exon Skipping
Gene
ENSRNOG00000047230 | AABR07002134.1
Description
zinc finger protein 551 [Source:NCBI gene;Acc:682964]
Coordinates
chr1:66894821-66904539:+
Coord C1 exon
chr1:66894821-66895197
Coord A exon
chr1:66895752-66895790
Coord C2 exon
chr1:66900353-66904539
Length
39 bp
Sequences
Splice sites
3' ss Seq
CAGCCTCCTCCTTTTTTCAGGTT
3' ss Score
11.01
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCGGAGTTGAGCCAATGGAAATTCGGCATTTATTCTTATTTTGGGGGTGTATGTCTCTCTCTCTCGGTCTATGTGTGTGTGTAAGTGTGCGCACGCGGTTTTGTGATTCTTGTCTGGAACTGGACTTCCAGCGTGGCGTTCTTGGCGATCGTTTTGGCGTTTCTGGGGTTTGTTTACCTGACAGAAGCTCGGAGCGCGGTGGGCTGTTCGGATGGCGGAGAGCCAAGAGCTGTTCTGCAGTAAGGAGGCCCGGCTGAGGCCCAGCGACTCCGCCCAAGTGCCCCGAGCCTTGCCTATGGAAGAGACCTCGGTGACCTGGTCCTTGCTTCCTCTGCAGAATCCAATGGCTGTGGCCACGCACAGGAACCTGGTCCAG
Seq A exon
GTTCCCCTAATTTCAGAACCAGTTATGGAGGTTGGCCTG
Seq C2 exon
GTTCCTGCACTGGAATGGGGAGTAAAGAGGTAACTTGTGAGCCTAATGCACCTGCAGAAGGGGTGGTATGTAACAAAAGTCCAATTCCCCAGGAGAGTCATCTCTTTGAGATACCTGTCCCAGCTTTGGAAGACATTGTGCACCAGACTGAGTTCCTAAGCACACATCCTGTTCTGACATTGGGCTCAGGCAGAACAGGTTCCTGTTTAAATGAAGACAATAACCAGTATCAGAAGAGTTACAGTGGAGGAAAGTCCTGTGAAAGGGATCCTGACAAGGCTTCAGCTATGTCAAGCTGCATATCCCATGTGTTGACCAAGCCATTCATCTGTGGGAAGGATGGGGAGGAGGCCCTCACCTCTACAGTCTGTCTTCAGCAACAGGGTGCTTGTCATAGTGAACAGCCCTCCACAGGCTGTCTTCAGCAGCAGGACACTTGTAGTAATGAACAGCCTCACAGCAGCAGCAAGAGTGGGGAAGCACTTTTGAATGGAAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047230_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.077
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF0009621=zf-C2H2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGTCCTTGCTTCCTCT
R:
GCAGGTGCATTAGGCTCACAA
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]