HsaEX0000786 @ hg19
Exon Skipping
Gene
ENSG00000249233 | AC004017.1
Description
NA
Coordinates
chr19:58212606-58220536:-
Coord C1 exon
chr19:58220307-58220536
Coord A exon
chr19:58216221-58216347
Coord C2 exon
chr19:58212606-58214156
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTCCCATTGTGGCAGGGC
3' ss Score
6.71
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CGGATCAGAGATAGCAGAGCGCCGAGTTGGGGCCACGAAGGCGTGAGGGGAGTCGTCGTCCCTCCTGCACGAAAGCGTCTAAGCCTTGGCGACGCCGCCCTGGGGGACCCACGTCAGGCCTGGGATAGGGACCGCTGTCCCCGGGTCCCTACCAATGTCGCCCGTCGCTCCCGGCCCAGCTCTACCCGCAGAGTCTGATGGCAGCGGCCACTCTGAGGACGCCAACTCAG
Seq A exon
GGCACTGTGACCTTTGAAGATGTGGCCGTACACTTCTCCTGGGAGGAATGGGGTCTCCTTGATGAGGCTCAAAGATGCCTGTACCGTGATGTGATGCTGGAGAACTTGGCTCTTTTAACCTCTCTAG
Seq C2 exon
ATGTTCATCATCAGAAGCAGCACCTTGGAGAAAAACATTTCAGAAGCAATGTGGGCAGAGCCTTGTTTGTGAAGACCTGCACATTCCATGTGTCAGGGGAGCCTTCCACCTGCAGAGAAGTTGGGAAGGACTTCCTGGCCAAGTTGGGATTTCTCCATCAACAGGCTGCTCACACTGGGGAGCAATCAAATAGCAAAAGCGACGGTGGGGCCATCAGTCACAGAGGAAAAACTCATTACAACTGTGGAGAACACACAAAAGCATTCAGCGGTAAACACACACTTGTTCAGCAGCAGAGAACCCTCACTACAGAAAGATGTTACATATGCAGTGAATGTGGGAAATCCTTTAGCAAAAGCTACAGTCTCAATGACCATTGGAGACTTCACACTGGAGAAAAGCCTTATGAATGTCGAGAGTGTGGGAAGTCCTTTAGGCAAAGCTCTAGTCTCATTCAGCACCGGAGAGTTCACACTGCAGTACGACCTCATGAATGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249233-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.112
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGAGATAGCAGAGCGCC
R:
CCAAGGTGCTGCTTCTGATGA
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)