HsaEX0000786 @ hg38
Exon Skipping
Gene
ENSG00000179909 | ZNF154
Description
zinc finger protein 154 [Source:HGNC Symbol;Acc:HGNC:12939]
Coordinates
chr19:57701238-57709194:-
Coord C1 exon
chr19:57708939-57709194
Coord A exon
chr19:57704853-57704979
Coord C2 exon
chr19:57701238-57702788
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTCCCATTGTGGCAGGGC
3' ss Score
6.71
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
TTTTAGCTTCTCTGAGGTGTGTTCACCGGATCAGAGATAGCAGAGCGCCGAGTTGGGGCCACGAAGGCGTGAGGGGAGTCGTCGTCCCTCCTGCACGAAAGCGTCTAAGCCTTGGCGACGCCGCCCTGGGGGACCCACGTCAGGCCTGGGATAGGGACCGCTGTCCCCGGGTCCCTACCAATGTCGCCCGTCGCTCCCGGCCCAGCTCTACCCGCAGAGTCTGATGGCAGCGGCCACTCTGAGGACGCCAACTCAG
Seq A exon
GGCACTGTGACCTTTGAAGATGTGGCCGTACACTTCTCCTGGGAGGAATGGGGTCTCCTTGATGAGGCTCAAAGATGCCTGTACCGTGATGTGATGCTGGAGAACTTGGCTCTTTTAACCTCTCTAG
Seq C2 exon
ATGTTCATCATCAGAAGCAGCACCTTGGAGAAAAACATTTCAGAAGCAATGTGGGCAGAGCCTTGTTTGTGAAGACCTGCACATTCCATGTGTCAGGGGAGCCTTCCACCTGCAGAGAAGTTGGGAAGGACTTCCTGGCCAAGTTGGGATTTCTCCATCAACAGGCTGCTCACACTGGGGAGCAATCAAATAGCAAAAGCGACGGTGGGGCCATCAGTCACAGAGGAAAAACTCATTACAACTGTGGAGAACACACAAAAGCATTCAGCGGTAAACACACACTTGTTCAGCAGCAGAGAACCCTCACTACAGAAAGATGTTACATATGCAGTGAATGTGGGAAATCCTTTAGCAAAAGCTACAGTCTCAATGACCATTGGAGACTTCACACTGGAGAAAAGCCTTATGAATGTCGAGAGTGTGGGAAGTCCTTTAGGCAAAGCTCTAGTCTCATTCAGCACCGGAGAGTTCACACTGCAGTACGACCTCATGAATGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179909_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.112
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGAGATAGCAGAGCGCC
R:
CCAAGGTGCTGCTTCTGATGA
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development