GgaEX0000937 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:44416808-44417861:+
Coord C1 exon
chrUn_random:44416808-44416822
Coord A exon
chrUn_random:44417012-44417138
Coord C2 exon
chrUn_random:44417751-44417861
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGGAGCTCTTTGCTTGCAGGAG
3' ss Score
4.82
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
ATGGCCACATCTCAG
Seq A exon
GAGCCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCACTGCTGGACCCTTCGCAGCGAGCGCAGTACCGGGATGTGATGCTGGAGACGTACGAGTCCGTGGCCTGGCTGG
Seq C2 exon
CTGAACTTCCAGTCCCCAAACCCATGGTGATCTCCCTGCTGGAAGGAGGGGAAGAGCCCTGGATCCCAGATGTGCACAGCCATGAGGACGTAGCGGAAGACTTTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000915-'0-2,'0-1,1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=83.7)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]