BtaEX0041250 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000012353 | ZNF34

Description

zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]

Coordinates

chr14:1491984-1503684:-

Coord C1 exon

chr14:1502342-1503684

Coord A exon

chr14:1496729-1496855

Coord C2 exon

chr14:1491984-1494363

Length

127 bp

Sequences

Splice sites

3' ss Seq

AGCAGCTCCTGTTGTTACAGGCT

3' ss Score

4.86

5' ss Seq

TGGGTGAGC

5' ss Score

7.23

Exon sequences

Seq C1 exon

GTCATGAGTCCAGACTGCCAACTGGCGGCAGCCTTTGGAGCCAAAGCTTAGCTCTTATGTTGCCTGGCAAATCCCATGGACGGAGGAGCCCTCCGTGGGGTCGCTAGGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTCCACATTCATGCATTGAAGGAAATGGCAACCCACTTCAGTGTTCTTGCCTGGAGGATCCCAGGGATGGGGGAGCCTGGTGGGCTGCTGTCTCTGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGACTGCTGACCACCGAGACGCGGAGTCCTGTTCCCAGAGCGACCGGAAGGCGCCTCCTGCCAGTATCTCGGAGGAGGGATCGTCACTTCCGGTCAGATTTAGGTCTTCAGGGCTTAGGGAGCAGGCGGGGCCTGGTCGGTCATCCGCTGTTGGGCGGCGCTGAG

Seq A exon

GCTGAAGTGACCTTCGAGGACGTGGCTGTGTTCCTTTCGCAGGAGGAGTGGGGCCTTCTGGGCCCTGCTCAGAAGGGCCTCTACAGGGAAGTGATGCTGGAGACTTACAGGAACCTGGTATCGCTGG

Seq C2 exon

CTCATGGGACCAGGACTGAGAACCAGGAGGTCACTTCAGGAGAAATGCTGTTTGGGAGAGAACTGGACCCACTCAGGGGGAGTGTTCTCCGGGGACCTGAGCCAGGAGAAGTCCATGAGCGTGTCAGGGAGCCAGAGGGGCGCCTGGACAGGCCTGGGGAGCAGAGAGGCCCCAGGCTGGTCACACTGGCCAATGAGGAGTGTGGCCTGGAGTCTGGAGGAAACCTCAGGTCGCGGTCAAGGCCTGTCCCTGATCAAAGACCTCACAAATGTGATATATGTGAACAGAGTTTTGAACAGAGATCATACCTTAATAACCATAAACATGTACACAGGTGCAAAAAAACAAATATAGTTCACGATTCAGGGGAAATTTTCGCTGCGAATTTAGTTAAAGAAGATCAGAAAATTCCTGTTGGGAAAAGATTGTATTATTGTGGTTGTTGTGGGAAGGCCTTCAGGTACAGTGCTAACCTTGTCAAGCACCAGCGACTGCACAGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000012353_MULTIEX1-4/6=C1-C2

Average complexity

C3*

Mappability confidence:

100%=100=100%

Protein Impact

In the CDS, with uncertain impact

No structure available

Features

Disorder rate (Iupred):

C1=NA A=0.000 C2=0.226

Domain overlap (PFAM):

C1:

NA

A:

PF0135222=KRAB=FE(84.8=100)

C2:

PF0009621=zf-C2H2=WD(100=5.1),PF0013017=C1_1=WD(100=12.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF0013017=C1_1=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)

Main Inclusion Isoform:

ENSBTAP00000046669