HsaALTD1053787-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000083817 | ZNF416
Description
zinc finger protein 416 [Source:HGNC Symbol;Acc:HGNC:20645]
Coordinates
chr19:57578057-57579019:-
Coord C1 exon
chr19:57578919-57579019
Coord A exon
chr19:57578672-57578918
Coord C2 exon
chr19:57578057-57578098
Length
247 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TAGCCTTCCTCTTCCCGCAGGTT
3' ss Score
11.02
Exon sequences
Seq C1 exon
GCTTCTGAGAACTACATTACCCATAATGCCGAGCGCCAAGCTGCAAAGACGCGGAGCCAATCAACGTTCAGGAACGGACCTGTCTCCGTTTGTTGCATACG
Seq A exon
GTAAGGCGGGACTTCCGGCACCGCTCCGAGATGGTAATTTTGGTGGTTCTCTACCTCGGCCCACGCCGCCTGAGTTAGAAACGCTGCCTCCGGCACAGAGCGGGGGTCGCCCCGCTGCGCATCAGCCGGTGGGTCGCTGGCGCTGGTGGCAGCCGTGCCTGGGTTCCCGCCCCGGGTCGCCCGCCGCTCCCGGCCCCGCTCCGCTCACAATCCGATGGCGGCGGCCGTGCTTAGGGATTCGACTTCG
Seq C2 exon
GTTCCCGTGACTGCAGAAGCTAAACTTATGGGCTTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083817-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGAGAACTACATTACCCA
R:
TGTGTAAAGCCCATAAGTTTAGCT
Band lengths:
142-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains