HsaEX0073877 @ hg19

Exon Skipping

Gene

ENSG00000183647 | ZNF530

Description

zinc finger protein 530 [Source:HGNC Symbol;Acc:29297]

Coordinates

chr19:58115645-58124285:+

Coord C1 exon

chr19:58115645-58115774

Coord A exon

chr19:58117054-58117811

Coord C2 exon

chr19:58123871-58124285

Length

758 bp

Sequences

Splice sites

3' ss Seq

CAGCATTTCTCTTCTTTCAGGTT

3' ss Score

9.7

5' ss Seq

CAGGTATCT

5' ss Score

7.33

Exon sequences

Seq C1 exon

CAGGTTTTTGTAGCCTTTGAGGATGTGGCCATTTACTTCTCCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCAGTTATGGCATCCCTAG

Seq A exon

GTTGCTGGTGTGGAGCAGTAGATGAGGGGACGCCTTCTGCAGAGAGCGTTTCTGTGGAAGAACTGTCACAGGGCAGGACTCCAAAGGCAGATACATCCACTGATAAGAGTCACCCCTGTGAGATTTGTACCCCAGTCCTGAGAGACATTTTACAAATGATTGAGCTCCATGCCTCACCCTGTGGACAGAAATTGTACTTGGGTGGAGCATCAAGAGATTTCTGGATGAGTTCAAACCTTCACCAGCTCCAGAAGCTTGATAATGGAGAGAAGCTCTTTAAAGTGGATGGGGACCAGGCCTCATTTATGATGAACTGCAGGTTCCATGTGTCAGGAAAACCCTTCACGTTTGGGGAAGTCGGGAGGGACTTTTCAGCCACCTCAGGACTTCTCCAGCATCAGGTGACTCCCACCATTGAGAGACCACACAGCAGGATTAGACACTTGAGAGTTCCCACTGGACGAAAGCCTCTCAAATACACTGAATCCAGGAAATCTTTTAGAGAGAAATCTGTATTCATTCAACACCAAAGAGCTGACTCTGGAGAAAGGCCTTACAAGTGCAGTGAATGTGGGAAATCCTTTAGTCAAAGTTCTGGCTTTCTTCGACACAGGAAAGCACACGGTAGAACAAGGACTCATGAATGTAGTGAATGTGGGAAATCATTTAGTCGCAAAACTCACCTAACTCAACACCAAAGAGTTCACACTGGAGAAAGGCCTTATGACTGCAGTGAATGTGGCAAATCCTTTCGCCAG

Seq C2 exon

GTATTATTGAGTGTTTTCAAGAATGAAAAGAGGCCTGGCATGGTGGCTCACATCTGTAATCCCAACTTTTTGGGAGGCTGAGGTGGGAGGATCCCTTGAGCCCAAGAGTTTGAGGCTGCAGCAAGCTATGATCGTGCCACTACACTCCAGCCTGTGCAACACAGTGAGATCCTGTCTCCAAAATTAAATAAATAAATAAAATTACATTTTGGAGACTAAACGCTGCTTGTAGTCATAGTTCTAACACAGCTGTGTGCTCAGCTTCATTTGCTCACTTCTCAGAATTCAATGTCTCCTGCTCAAATTTTGCTGTCATCTTAACCGTTTTCACTTATCACAGATATGTTTCTCCAGGTCCATTTCGTCATGTATCTGTGAATAACTACAGAATTATTAACTTTGAGTAATTTGGCCG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000183647_MULTIEX1-2/3=1-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. Stop)

Show structural model

Features

Disorder rate (Iupred):

C1=0.000 A=0.172 C2=NA

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=100.0),PF0006814=Phospholip_A2_1=PU(60.6=95.2)

A:

PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)

C2:

PF0135222=KRAB=PD(0.1=0.0)

Main Inclusion Isoform:

ENSP00000332861