BtaEX0041412 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004939 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr18:47629549-47639361:-
Coord C1 exon
chr18:47639304-47639361
Coord A exon
chr18:47629952-47630078
Coord C2 exon
chr18:47629549-47629644
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGGGAGTATGTTGTTACAGGAC
3' ss Score
2.97
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTCTGCCTTCTCAGGCTCAGTCCATTCCCAGAAAGAAGAGGAAATGAATGAATTCCAG
Seq A exon
GACACGGTGACATTCAAAGATGTGGCTATTGACTTCACTCAGGAAGAGTGGAAGCAATTGGATCCAGCTCAAAGAAACCTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTGG
Seq C2 exon
GATGTCCATTCACCAAACCTGATGTGATTTTCAAGTTGGAGCAAGAAGAAGAACCATGGGTCATGGAGGAAGAAGTGTTAAAGAAACATTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004939_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGGCTCAGTCCATTCCC
R:
TGTTTCTTTAACACTTCTTCCTCCA
Band lengths:
138-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development