HsaEX0073968 @ hg38
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr19:37411155-37444964:-
Coord C1 exon
chr19:37444907-37444964
Coord A exon
chr19:37426252-37426378
Coord C2 exon
chr19:37411155-37414419
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGGGAGTGTGTTGTTACAGGGA
3' ss Score
3.17
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTCTACTTCTGCAGGCCCCATCCCTTCCCAGAAAGAAGAGGAAATGACTGAGTCCCAG
Seq A exon
GGAACAGTAACATTCAAAGATGTGGCTATCGACTTCACTCAGGAGGAGTGGAAGAGATTGGATCCTGCTCAGAGAAAACTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTAG
Seq C2 exon
GAGAAATATGGGGAGTTGATGAGCATCAGAAAAACCAGGACAGACTTTTGAGACAAGTTGAAGTTAAATTCCAGAAAACACTGACTGAAGAAAAAGGCAATGAATGTCAAAAGAAATTTGCAAATGTATTTCCTCTGAACTCTGATTTTTTCCCTTCCAGACACAATCTCTATGAGTATGACTTATTTGGAAAGTGTTTAGAACATAATTTTGACTGTCATAATAATGTGAAATGCCTTATGAGAAAGGAGCATTGTGAATATAATGAACCTGTGAAATCATATGGTAATAGCTCATCCCATTTTGTCATTACCCCCTTTAAGTGTAATCATTGTGGAAAAGGCTTCAATCAGACTTTGGACCTCATCAGACATCTGAGAATTCATACTGGAGAGAAGCCCTATGAATGTAGTAACTGTAGAAAAGCCTTCAGTCACAAGGAAAAACTTATTAAACATTATAAAATTCACAGTAGGGAGCAGTCTTACAAATGTAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-10/11=7-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.875 A=0.023 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACTTCTGCAGGCCCCAT
R:
AAGTCATACTCATAGAGATTGTGTCT
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development