HsaEX0073969 @ hg38
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr19:37411155-37426378:-
Coord C1 exon
chr19:37426252-37426378
Coord A exon
chr19:37425868-37425963
Coord C2 exon
chr19:37411155-37414419
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGTAACTTCCCTTTGACAGGCT
3' ss Score
6.92
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAACAGTAACATTCAAAGATGTGGCTATCGACTTCACTCAGGAGGAGTGGAAGAGATTGGATCCTGCTCAGAGAAAACTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTAG
Seq A exon
GCTATCCGTTCACCAAACCTGATGTGATTTTCAAATTGGAGCAAGAAGAAGAACCATGGGTGATGGAGGAAGAAGTATTAAGGAGACACTGGCAAG
Seq C2 exon
GAGAAATATGGGGAGTTGATGAGCATCAGAAAAACCAGGACAGACTTTTGAGACAAGTTGAAGTTAAATTCCAGAAAACACTGACTGAAGAAAAAGGCAATGAATGTCAAAAGAAATTTGCAAATGTATTTCCTCTGAACTCTGATTTTTTCCCTTCCAGACACAATCTCTATGAGTATGACTTATTTGGAAAGTGTTTAGAACATAATTTTGACTGTCATAATAATGTGAAATGCCTTATGAGAAAGGAGCATTGTGAATATAATGAACCTGTGAAATCATATGGTAATAGCTCATCCCATTTTGTCATTACCCCCTTTAAGTGTAATCATTGTGGAAAAGGCTTCAATCAGACTTTGGACCTCATCAGACATCTGAGAATTCATACTGGAGAGAAGCCCTATGAATGTAGTAACTGTAGAAAAGCCTTCAGTCACAAGGAAAAACTTATTAAACATTATAAAATTCACAGTAGGGAGCAGTCTTACAAATGTAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-11/11=10-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.023 A=0.002 C2=0.024
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGATTGGATCCTGCTCA
R:
TGCCTTTTTCTTCAGTCAGTGT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development