BtaEX6081963 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004939 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr18:47619376-47630078:-
Coord C1 exon
chr18:47629952-47630078
Coord A exon
chr18:47629549-47629644
Coord C2 exon
chr18:47619376-47621195
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACATCCTTTCCCTTTCACAGGAT
3' ss Score
11.05
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GACACGGTGACATTCAAAGATGTGGCTATTGACTTCACTCAGGAAGAGTGGAAGCAATTGGATCCAGCTCAAAGAAACCTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTGG
Seq A exon
GATGTCCATTCACCAAACCTGATGTGATTTTCAAGTTGGAGCAAGAAGAAGAACCATGGGTCATGGAGGAAGAAGTGTTAAAGAAACATTGTCCAG
Seq C2 exon
GAGAAATATGGGGGATGGATGAGCAGCTGAAAATTCAGGACAGACTTTTGACACAACTTGAAGATAAATTCACAAAAACACTGACTGATGAAAAAGTCAGTGAATGTCATAAGAAATTTGCAAATGCATTTCCTCTGAACTCAGACTTTTTTCCTTCCAGTCACAGTGTCTATGAATATGACTTATTTGGAAAATGTTTAGAACATAATAATTTGAACTATTGTGAGAGAATCTTTATAGGAAGAGAAGACTGTGAATATAAGGAGCCTATGAAATCATTTGGCAATAGCTTATCCCATCTTGTAGTAACCCCCTTTAAGTGTAATCATTGTGGAAAAGGTTTTGATCAAACTTTGGACCTCATCAGACACTTGAGAATTCATACTGGAGAGAAACCCTATGAATGTAAAAAATGTAGAAAAGCTTTTGGTCACAAGGAAAAACTGATTAAACATCATAAAATTCACAGTAGGGAGCAGTCTTATGAATGTAATGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004939-'6-6,'6-3,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGACATTCAAAGATGTGGC
R:
AGTTGTGTCAAAAGTCTGTCCTGA
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]