HsaEX0073967 @ hg38
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr19:37426252-37444964:-
Coord C1 exon
chr19:37444907-37444964
Coord A exon
chr19:37431559-37431644
Coord C2 exon
chr19:37426252-37426378
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTTTTCTCAAGCAGGAG
3' ss Score
7.96
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTCTACTTCTGCAGGCCCCATCCCTTCCCAGAAAGAAGAGGAAATGACTGAGTCCCAG
Seq A exon
GAGTCTCTCCTTGTAGCCACCACACGGGAAATGTGCTGGGTCACACCTGAAGCCAGCATGTCTCTGAGTCTCACCCAAGGCCCATG
Seq C2 exon
GGAACAGTAACATTCAAAGATGTGGCTATCGACTTCACTCAGGAGGAGTGGAAGAGATTGGATCCTGCTCAGAGAAAACTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-8/11=7-10
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.759 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000448051fB8180
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACTTCTGCAGGCCCCAT
R:
TATAGTTTTCTAGCATCACATTCCGG
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development