HsaEX0073967 @ hg19
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:24737]
Coordinates
chr19:37917154-37935866:-
Coord C1 exon
chr19:37935809-37935866
Coord A exon
chr19:37922461-37922549
Coord C2 exon
chr19:37917154-37917280
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTCCTTTTCTCAAGCAG
3' ss Score
6.44
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTCTACTTCTGCAGGCCCCATCCCTTCCCAGAAAGAAGAGGAAATGACTGAGTCCCAG
Seq A exon
CAGGAGTCTCTCCTTGTAGCCACCACACGGGAAATGTGCTGGGTCACACCTGAAGCCAGCATGTCTCTGAGTCTCACCCAAGGCCCATG
Seq C2 exon
GGAACAGTAACATTCAAAGATGTGGCTATCGACTTCACTCAGGAGGAGTGGAAGAGATTGGATCCTGCTCAGAGAAAACTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-6/8=5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.367 C2=0.011
Domain overlap (PFAM):
C1:
PF0173211=DUF31=FE(10.9=100)
A:
NO
C2:
PF0173211=DUF31=FE(24.1=100),PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACTTCTGCAGGCCCCAT
R:
TATAGTTTTCTAGCATCACATTCCGG
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)