HsaEX0073966 @ hg38
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr19:37426252-37465473:-
Coord C1 exon
chr19:37465313-37465473
Coord A exon
chr19:37444907-37444964
Coord C2 exon
chr19:37426252-37426378
Length
58 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATTCTCTTCCCCAGCTC
3' ss Score
9.7
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGTTCTTCATATATTAAGGATTCATTCATTCATAGACTCATTTATTGAAGGCTGTCTGTGTAACAGGCACAATCCTAGGTGCTTGGGATATAGCAGTGAACAAGAGACAAACCCCCTACTATCATGGTACTTACATTTTTGTGGGCTGGATAATAAACAAG
Seq A exon
CTCTACTTCTGCAGGCCCCATCCCTTCCCAGAAAGAAGAGGAAATGACTGAGTCCCAG
Seq C2 exon
GGAACAGTAACATTCAAAGATGTGGCTATCGACTTCACTCAGGAGGAGTGGAAGAGATTGGATCCTGCTCAGAGAAAACTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-7/11=4-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.875 C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAATCCTAGGTGCTTGGGA
R:
TCCTGAGTGAAGTCGATAGCCA
Band lengths:
138-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development