HsaEX0073964 @ hg38
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr19:37444907-37467437:-
Coord C1 exon
chr19:37467084-37467437
Coord A exon
chr19:37465313-37465473
Coord C2 exon
chr19:37444907-37444964
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTTCAAATTTCTTTTCCAGAGT
3' ss Score
9.98
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCAGCGGAACGATTCGATTCTTCTCAGCACCAAGTTGCGCTCCCAATCTCTCAGAGCTGGGCTCGCGGGAGGCCGCTCGTGCAAAACCTAGGCTGAGCTCCCCTGCGCGGAGCTGTGAGCCCTGGAACACCGTGGTCTGCTTCTCAGGACGCGCAAACAGTGAAGCCAGTCCCGCCCGGGTGAGCCGCGGGGGCCTCTGGGAAGCGTCGCCCCTGGTGTAACGGACCGAGACTTGTGGCGCTCTCAGCCACCGACAGCGCCGGCCTCAGTGCCGCCTCTGTCCCAGCCCGCGCCGGCTCTGCCACTTTGGCAGCGTTAAGTGTGGAATCGGGGCCTGTGTCCGCGGGCTTGGTG
Seq A exon
AGTTCTTCATATATTAAGGATTCATTCATTCATAGACTCATTTATTGAAGGCTGTCTGTGTAACAGGCACAATCCTAGGTGCTTGGGATATAGCAGTGAACAAGAGACAAACCCCCTACTATCATGGTACTTACATTTTTGTGGGCTGGATAATAAACAAG
Seq C2 exon
CTCTACTTCTGCAGGCCCCATCCCTTCCCAGAAAGAAGAGGAAATGACTGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-4/11=2-7
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.875
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACCGTGGTCTGCTTCTC
R:
GATGGGGCCTGCAGAAGTAGA
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development