MmuEX1028635 @ mm10
Exon Skipping
Gene
ENSMUSG00000059975 | Zfp74
Description
zinc finger protein 74 [Source:MGI Symbol;Acc:MGI:107784]
Coordinates
chr7:29943491-29954087:-
Coord C1 exon
chr7:29953855-29954087
Coord A exon
chr7:29951714-29951890
Coord C2 exon
chr7:29943491-29943545
Length
177 bp
Sequences
Splice sites
3' ss Seq
AGGTGGTGCTCTGTTTTCAGCTC
3' ss Score
7.17
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGGATCCTTTCGGATTCTTCTCAGTTGCAAGTTGCACCCCCAGGCTGTGAATGCCAGGCCGCGGGGTAGCCGCTGCTACAAAACCCGCCCAGGCTCAAGCCGGTCCCCCTGCCGCAGCGCCGCGCCCTTACCCGAGCCTTGGCCACTCTCCTGACTCGCACGCCGAAGGCCAGACCCGCCCGGCGAGCCGCGCGGCCCTCTGGGAAGTGCTACCCTGCGCCTAGCGGACCCAG
Seq A exon
CTCTCATTTTCAGAGTTCTTCCTGCGCTGAGGAGCCTTTTATAAACTCAATATTTATTGAATGTTGGACATATATCAGTCAATTGTTGGTGTGTGGGATATAGCAGCGAACAAAAGAAGCAGTGACCCCCCCCCCTCTCATGATGCTTACATTGCCGAGGACCAGATAATAAACAAA
Seq C2 exon
TTCAGCTTGCTCAGGACCTCCCCCCTAAAAAGAAGAGGAAATGACCGAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059975_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATTCTTCTCAGTTGCAAGT
R:
GGAGGTCCTGAGCAAGCTGAA
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types